(10 nodes) RNA decapping, and Cellular response to cycloheximide network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6SXK5_CIOIN	Uncharacterized protein. (504 aa)
	F7BD94_CIOIN	Ge1_WD40 domain-containing protein. (1352 aa)
	F7B898_CIOIN	Uncharacterized protein; Belongs to the DEAD box helicase family. (435 aa)
	F6YX22_CIOIN	Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family. (145 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (132 aa)
	F6WP26_CIOIN	Uncharacterized protein. (292 aa)
	H2XPH6_CIOIN	Uncharacterized protein. (504 aa)
	H2XSE6_CIOIN	PAT1 domain-containing protein. (580 aa)
	H2XWR8_CIOIN	Nudix hydrolase domain-containing protein. (235 aa)
	H2XXZ2_CIOIN	XRN1_D2_D3 domain-containing protein. (149 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SXK5_CIOIN	F6WP26_CIOIN	ENSCINP00000002604	ENSCINP00000025899	Uncharacterized protein.	Uncharacterized protein.	0.932
F6SXK5_CIOIN	F6YX22_CIOIN	ENSCINP00000002604	ENSCINP00000024551	Uncharacterized protein.	Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family.	0.569
F6SXK5_CIOIN	F7B898_CIOIN	ENSCINP00000002604	ENSCINP00000015240	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.534
F6SXK5_CIOIN	F7BD94_CIOIN	ENSCINP00000002604	ENSCINP00000011365	Uncharacterized protein.	Ge1_WD40 domain-containing protein.	0.696
F6SXK5_CIOIN	H2XPH6_CIOIN	ENSCINP00000002604	ENSCINP00000031560	Uncharacterized protein.	Uncharacterized protein.	0.714
F6SXK5_CIOIN	H2XSE6_CIOIN	ENSCINP00000002604	ENSCINP00000032580	Uncharacterized protein.	PAT1 domain-containing protein.	0.865
F6SXK5_CIOIN	H2XWR8_CIOIN	ENSCINP00000002604	ENSCINP00000034102	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.871
F6SXK5_CIOIN	H2XXZ2_CIOIN	ENSCINP00000002604	ENSCINP00000034526	Uncharacterized protein.	XRN1_D2_D3 domain-containing protein.	0.519
F6SXK5_CIOIN	LSM1	ENSCINP00000002604	ENSCINP00000024810	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.868
F6WP26_CIOIN	F6SXK5_CIOIN	ENSCINP00000025899	ENSCINP00000002604	Uncharacterized protein.	Uncharacterized protein.	0.932
F6WP26_CIOIN	F6YX22_CIOIN	ENSCINP00000025899	ENSCINP00000024551	Uncharacterized protein.	Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family.	0.762
F6WP26_CIOIN	F7B898_CIOIN	ENSCINP00000025899	ENSCINP00000015240	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.989
F6WP26_CIOIN	F7BD94_CIOIN	ENSCINP00000025899	ENSCINP00000011365	Uncharacterized protein.	Ge1_WD40 domain-containing protein.	0.988
F6WP26_CIOIN	H2XPH6_CIOIN	ENSCINP00000025899	ENSCINP00000031560	Uncharacterized protein.	Uncharacterized protein.	0.972
F6WP26_CIOIN	H2XSE6_CIOIN	ENSCINP00000025899	ENSCINP00000032580	Uncharacterized protein.	PAT1 domain-containing protein.	0.958
F6WP26_CIOIN	H2XWR8_CIOIN	ENSCINP00000025899	ENSCINP00000034102	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.998
F6WP26_CIOIN	H2XXZ2_CIOIN	ENSCINP00000025899	ENSCINP00000034526	Uncharacterized protein.	XRN1_D2_D3 domain-containing protein.	0.932
F6WP26_CIOIN	LSM1	ENSCINP00000025899	ENSCINP00000024810	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.862
F6YX22_CIOIN	F6SXK5_CIOIN	ENSCINP00000024551	ENSCINP00000002604	Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family.	Uncharacterized protein.	0.569
F6YX22_CIOIN	F6WP26_CIOIN	ENSCINP00000024551	ENSCINP00000025899	Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family.	Uncharacterized protein.	0.762