16 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100187540	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (235 aa)
	F6PH64_CIOIN	Uncharacterized protein; Belongs to the DEAD box helicase family. (652 aa)
	F6YS67_CIOIN	Uncharacterized protein; Belongs to the DEAD box helicase family. (598 aa)
	LOC101242392	Eukaryotic translation initiation factor 4E type 2; Belongs to the eukaryotic initiation factor 4E family. (219 aa)
	F6XMT9_CIOIN	Uncharacterized protein. (261 aa)
	LOC100177596	Eukaryotic initiation factor 4A-I; Belongs to the DEAD box helicase family. (430 aa)
	F7B4V3_CIOIN	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (225 aa)
	F6RWU5_CIOIN	MIF4G domain-containing protein. (689 aa)
	F7B7F7_CIOIN	Uncharacterized protein. (427 aa)
	F6ZAE1_CIOIN	RRM domain-containing protein. (249 aa)
	F6RZE8_CIOIN	RRM domain-containing protein. (329 aa)
	F6WI66_CIOIN	Uncharacterized protein; Belongs to the DEAD box helicase family. (659 aa)
	F6R3K6_CIOIN	Uncharacterized protein. (1037 aa)
	LOC100183767	Uncharacterized protein LOC100183767. (183 aa)
	F7BEQ8_CIOIN	MIF4G domain-containing protein. (212 aa)
	H2XKN7_CIOIN	Uncharacterized protein. (116 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PH64_CIOIN	F6WI66_CIOIN	ENSCINP00000001420	ENSCINP00000015662	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.449
F6PH64_CIOIN	F6YS67_CIOIN	ENSCINP00000001420	ENSCINP00000002778	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.450
F6R3K6_CIOIN	F6RWU5_CIOIN	ENSCINP00000018021	ENSCINP00000010668	Uncharacterized protein.	MIF4G domain-containing protein.	0.615
F6R3K6_CIOIN	F6RZE8_CIOIN	ENSCINP00000018021	ENSCINP00000015203	Uncharacterized protein.	RRM domain-containing protein.	0.682
F6R3K6_CIOIN	F6WI66_CIOIN	ENSCINP00000018021	ENSCINP00000015662	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.493
F6R3K6_CIOIN	F6XMT9_CIOIN	ENSCINP00000018021	ENSCINP00000005712	Uncharacterized protein.	Uncharacterized protein.	0.720
F6R3K6_CIOIN	F6YS67_CIOIN	ENSCINP00000018021	ENSCINP00000002778	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.493
F6R3K6_CIOIN	F6ZAE1_CIOIN	ENSCINP00000018021	ENSCINP00000014730	Uncharacterized protein.	RRM domain-containing protein.	0.619
F6R3K6_CIOIN	F7B4V3_CIOIN	ENSCINP00000018021	ENSCINP00000008672	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.942
F6R3K6_CIOIN	LOC100177596	ENSCINP00000018021	ENSCINP00000005836	Uncharacterized protein.	Eukaryotic initiation factor 4A-I; Belongs to the DEAD box helicase family.	0.904
F6R3K6_CIOIN	LOC100187540	ENSCINP00000018021	ENSCINP00000000571	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.877
F6R3K6_CIOIN	LOC101242392	ENSCINP00000018021	ENSCINP00000004765	Uncharacterized protein.	Eukaryotic translation initiation factor 4E type 2; Belongs to the eukaryotic initiation factor 4E family.	0.652
F6RWU5_CIOIN	F6R3K6_CIOIN	ENSCINP00000010668	ENSCINP00000018021	MIF4G domain-containing protein.	Uncharacterized protein.	0.615
F6RWU5_CIOIN	F6RZE8_CIOIN	ENSCINP00000010668	ENSCINP00000015203	MIF4G domain-containing protein.	RRM domain-containing protein.	0.708
F6RWU5_CIOIN	F6WI66_CIOIN	ENSCINP00000010668	ENSCINP00000015662	MIF4G domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.463
F6RWU5_CIOIN	F6XMT9_CIOIN	ENSCINP00000010668	ENSCINP00000005712	MIF4G domain-containing protein.	Uncharacterized protein.	0.725
F6RWU5_CIOIN	F6YS67_CIOIN	ENSCINP00000010668	ENSCINP00000002778	MIF4G domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.463
F6RWU5_CIOIN	F6ZAE1_CIOIN	ENSCINP00000010668	ENSCINP00000014730	MIF4G domain-containing protein.	RRM domain-containing protein.	0.676
F6RWU5_CIOIN	F7B4V3_CIOIN	ENSCINP00000010668	ENSCINP00000008672	MIF4G domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.984
F6RWU5_CIOIN	F7B7F7_CIOIN	ENSCINP00000010668	ENSCINP00000010674	MIF4G domain-containing protein.	Uncharacterized protein.	0.900