5 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100187540	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (235 aa)
	LOC101242392	Eukaryotic translation initiation factor 4E type 2; Belongs to the eukaryotic initiation factor 4E family. (219 aa)
	F7B4V3_CIOIN	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (225 aa)
	F6RWU5_CIOIN	MIF4G domain-containing protein. (689 aa)
	F6R3K6_CIOIN	Uncharacterized protein. (1037 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6R3K6_CIOIN	F6RWU5_CIOIN	ENSCINP00000018021	ENSCINP00000010668	Uncharacterized protein.	MIF4G domain-containing protein.	0.615
F6R3K6_CIOIN	F7B4V3_CIOIN	ENSCINP00000018021	ENSCINP00000008672	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.942
F6R3K6_CIOIN	LOC100187540	ENSCINP00000018021	ENSCINP00000000571	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.877
F6R3K6_CIOIN	LOC101242392	ENSCINP00000018021	ENSCINP00000004765	Uncharacterized protein.	Eukaryotic translation initiation factor 4E type 2; Belongs to the eukaryotic initiation factor 4E family.	0.652
F6RWU5_CIOIN	F6R3K6_CIOIN	ENSCINP00000010668	ENSCINP00000018021	MIF4G domain-containing protein.	Uncharacterized protein.	0.615
F6RWU5_CIOIN	F7B4V3_CIOIN	ENSCINP00000010668	ENSCINP00000008672	MIF4G domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.984
F6RWU5_CIOIN	LOC100187540	ENSCINP00000010668	ENSCINP00000000571	MIF4G domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.967
F6RWU5_CIOIN	LOC101242392	ENSCINP00000010668	ENSCINP00000004765	MIF4G domain-containing protein.	Eukaryotic translation initiation factor 4E type 2; Belongs to the eukaryotic initiation factor 4E family.	0.923
F7B4V3_CIOIN	F6R3K6_CIOIN	ENSCINP00000008672	ENSCINP00000018021	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein.	0.942
F7B4V3_CIOIN	F6RWU5_CIOIN	ENSCINP00000008672	ENSCINP00000010668	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	MIF4G domain-containing protein.	0.984
F7B4V3_CIOIN	LOC100187540	ENSCINP00000008672	ENSCINP00000000571	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.907
F7B4V3_CIOIN	LOC101242392	ENSCINP00000008672	ENSCINP00000004765	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Eukaryotic translation initiation factor 4E type 2; Belongs to the eukaryotic initiation factor 4E family.	0.910
LOC100187540	F6R3K6_CIOIN	ENSCINP00000000571	ENSCINP00000018021	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein.	0.877
LOC100187540	F6RWU5_CIOIN	ENSCINP00000000571	ENSCINP00000010668	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	MIF4G domain-containing protein.	0.967
LOC100187540	F7B4V3_CIOIN	ENSCINP00000000571	ENSCINP00000008672	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.907
LOC100187540	LOC101242392	ENSCINP00000000571	ENSCINP00000004765	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Eukaryotic translation initiation factor 4E type 2; Belongs to the eukaryotic initiation factor 4E family.	0.914
LOC101242392	F6R3K6_CIOIN	ENSCINP00000004765	ENSCINP00000018021	Eukaryotic translation initiation factor 4E type 2; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein.	0.652
LOC101242392	F6RWU5_CIOIN	ENSCINP00000004765	ENSCINP00000010668	Eukaryotic translation initiation factor 4E type 2; Belongs to the eukaryotic initiation factor 4E family.	MIF4G domain-containing protein.	0.923
LOC101242392	F7B4V3_CIOIN	ENSCINP00000004765	ENSCINP00000008672	Eukaryotic translation initiation factor 4E type 2; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.910
LOC101242392	LOC100187540	ENSCINP00000004765	ENSCINP00000000571	Eukaryotic translation initiation factor 4E type 2; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.914