(5 nodes) MicroRNA (miRNA) biogenesis network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6Z457_CIOIN	Uncharacterized protein. (447 aa)
	F6ZE98_CIOIN	Uncharacterized protein. (300 aa)
	F6W2K7_CIOIN	Uncharacterized protein. (222 aa)
	F6XSF3_CIOIN	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1872 aa)
	H2Y258_CIOIN	WW domain-containing protein. (243 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6W2K7_CIOIN	F6XSF3_CIOIN	ENSCINP00000016609	ENSCINP00000017117	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.766
F6W2K7_CIOIN	F6Z457_CIOIN	ENSCINP00000016609	ENSCINP00000003015	Uncharacterized protein.	Uncharacterized protein.	0.914
F6W2K7_CIOIN	F6ZE98_CIOIN	ENSCINP00000016609	ENSCINP00000012805	Uncharacterized protein.	Uncharacterized protein.	0.719
F6W2K7_CIOIN	H2Y258_CIOIN	ENSCINP00000016609	ENSCINP00000035993	Uncharacterized protein.	WW domain-containing protein.	0.641
F6XSF3_CIOIN	F6W2K7_CIOIN	ENSCINP00000017117	ENSCINP00000016609	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.766
F6XSF3_CIOIN	F6Z457_CIOIN	ENSCINP00000017117	ENSCINP00000003015	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.653
F6XSF3_CIOIN	F6ZE98_CIOIN	ENSCINP00000017117	ENSCINP00000012805	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.999
F6XSF3_CIOIN	H2Y258_CIOIN	ENSCINP00000017117	ENSCINP00000035993	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	WW domain-containing protein.	0.766
F6Z457_CIOIN	F6W2K7_CIOIN	ENSCINP00000003015	ENSCINP00000016609	Uncharacterized protein.	Uncharacterized protein.	0.914
F6Z457_CIOIN	F6XSF3_CIOIN	ENSCINP00000003015	ENSCINP00000017117	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.653
F6Z457_CIOIN	F6ZE98_CIOIN	ENSCINP00000003015	ENSCINP00000012805	Uncharacterized protein.	Uncharacterized protein.	0.927
F6Z457_CIOIN	H2Y258_CIOIN	ENSCINP00000003015	ENSCINP00000035993	Uncharacterized protein.	WW domain-containing protein.	0.914
F6ZE98_CIOIN	F6W2K7_CIOIN	ENSCINP00000012805	ENSCINP00000016609	Uncharacterized protein.	Uncharacterized protein.	0.719
F6ZE98_CIOIN	F6XSF3_CIOIN	ENSCINP00000012805	ENSCINP00000017117	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.999
F6ZE98_CIOIN	F6Z457_CIOIN	ENSCINP00000012805	ENSCINP00000003015	Uncharacterized protein.	Uncharacterized protein.	0.927
F6ZE98_CIOIN	H2Y258_CIOIN	ENSCINP00000012805	ENSCINP00000035993	Uncharacterized protein.	WW domain-containing protein.	0.719
H2Y258_CIOIN	F6W2K7_CIOIN	ENSCINP00000035993	ENSCINP00000016609	WW domain-containing protein.	Uncharacterized protein.	0.641
H2Y258_CIOIN	F6XSF3_CIOIN	ENSCINP00000035993	ENSCINP00000017117	WW domain-containing protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.766
H2Y258_CIOIN	F6Z457_CIOIN	ENSCINP00000035993	ENSCINP00000003015	WW domain-containing protein.	Uncharacterized protein.	0.914
H2Y258_CIOIN	F6ZE98_CIOIN	ENSCINP00000035993	ENSCINP00000012805	WW domain-containing protein.	Uncharacterized protein.	0.719