(10 nodes) POLB-Dependent Long Patch Base Excision Repair, and poly-ADP-D-ribose binding network (Ciona intestinalis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100175865	Histone PARylation factor 1. (339 aa)
	F6ZQY6_CIOIN	Poly [ADP-ribose] polymerase. (537 aa)
	F6V7V1_CIOIN	Uncharacterized protein. (513 aa)
	Ci-ZF(PARP)-3	Zinc finger protein. (565 aa)
	F6QM85_CIOIN	Uncharacterized protein. (505 aa)
	H2XNV1_CIOIN	Poly [ADP-ribose] polymerase. (659 aa)
	H2XU81_CIOIN	Uncharacterized protein. (584 aa)
	H2XW90_CIOIN	Uncharacterized protein. (92 aa)
	H2XXR3_CIOIN	Poly [ADP-ribose] polymerase. (472 aa)
	H2Y2Y0_CIOIN	ANK_REP_REGION domain-containing protein. (215 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ci-ZF(PARP)-3	F6QM85_CIOIN	ENSCINP00000019848	ENSCINP00000020121	Zinc finger protein.	Uncharacterized protein.	0.660
Ci-ZF(PARP)-3	F6V7V1_CIOIN	ENSCINP00000019848	ENSCINP00000012041	Zinc finger protein.	Uncharacterized protein.	0.907
Ci-ZF(PARP)-3	F6ZQY6_CIOIN	ENSCINP00000019848	ENSCINP00000011691	Zinc finger protein.	Poly [ADP-ribose] polymerase.	0.830
Ci-ZF(PARP)-3	H2XU81_CIOIN	ENSCINP00000019848	ENSCINP00000033215	Zinc finger protein.	Uncharacterized protein.	0.900
Ci-ZF(PARP)-3	H2XW90_CIOIN	ENSCINP00000019848	ENSCINP00000033924	Zinc finger protein.	Uncharacterized protein.	0.660
Ci-ZF(PARP)-3	H2XXR3_CIOIN	ENSCINP00000019848	ENSCINP00000034447	Zinc finger protein.	Poly [ADP-ribose] polymerase.	0.875
Ci-ZF(PARP)-3	LOC100175865	ENSCINP00000019848	ENSCINP00000004725	Zinc finger protein.	Histone PARylation factor 1.	0.700
F6QM85_CIOIN	Ci-ZF(PARP)-3	ENSCINP00000020121	ENSCINP00000019848	Uncharacterized protein.	Zinc finger protein.	0.660
F6QM85_CIOIN	F6V7V1_CIOIN	ENSCINP00000020121	ENSCINP00000012041	Uncharacterized protein.	Uncharacterized protein.	0.512
F6QM85_CIOIN	F6ZQY6_CIOIN	ENSCINP00000020121	ENSCINP00000011691	Uncharacterized protein.	Poly [ADP-ribose] polymerase.	0.723
F6QM85_CIOIN	H2XNV1_CIOIN	ENSCINP00000020121	ENSCINP00000031334	Uncharacterized protein.	Poly [ADP-ribose] polymerase.	0.530
F6QM85_CIOIN	H2XW90_CIOIN	ENSCINP00000020121	ENSCINP00000033924	Uncharacterized protein.	Uncharacterized protein.	0.600
F6QM85_CIOIN	H2XXR3_CIOIN	ENSCINP00000020121	ENSCINP00000034447	Uncharacterized protein.	Poly [ADP-ribose] polymerase.	0.660
F6QM85_CIOIN	H2Y2Y0_CIOIN	ENSCINP00000020121	ENSCINP00000036265	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.530
F6V7V1_CIOIN	Ci-ZF(PARP)-3	ENSCINP00000012041	ENSCINP00000019848	Uncharacterized protein.	Zinc finger protein.	0.907
F6V7V1_CIOIN	F6QM85_CIOIN	ENSCINP00000012041	ENSCINP00000020121	Uncharacterized protein.	Uncharacterized protein.	0.512
F6V7V1_CIOIN	H2XU81_CIOIN	ENSCINP00000012041	ENSCINP00000033215	Uncharacterized protein.	Uncharacterized protein.	0.900
F6V7V1_CIOIN	H2XW90_CIOIN	ENSCINP00000012041	ENSCINP00000033924	Uncharacterized protein.	Uncharacterized protein.	0.512
F6ZQY6_CIOIN	Ci-ZF(PARP)-3	ENSCINP00000011691	ENSCINP00000019848	Poly [ADP-ribose] polymerase.	Zinc finger protein.	0.830
F6ZQY6_CIOIN	F6QM85_CIOIN	ENSCINP00000011691	ENSCINP00000020121	Poly [ADP-ribose] polymerase.	Uncharacterized protein.	0.723