(17 nodes) Mixed, incl. BRISC complex, and Breast cancer carboxy-terminal domain network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ci-zf(zz)-8	Uncharacterized protein. (2337 aa)
	F6WWM2_CIOIN	TMC domain-containing protein. (662 aa)
	F6WPB7_CIOIN	BRCC36_C domain-containing protein. (108 aa)
	F6ZE87_CIOIN	Uncharacterized protein. (169 aa)
	LOC108949301	BRCT domain-containing protein. (292 aa)
	F6TK51_CIOIN	Uncharacterized protein. (350 aa)
	F7AFQ9_CIOIN	Uncharacterized protein. (482 aa)
	F6SA18_CIOIN	Uncharacterized protein. (643 aa)
	zf(ring)-23	RING-type domain-containing protein. (319 aa)
	LOC100182426	Uncharacterized protein. (137 aa)
	H2XLY1_CIOIN	Uncharacterized protein. (292 aa)
	LOC101242389	Uncharacterized protein. (192 aa)
	LOC100181080	Calcium and integrin-binding protein 1-like. (187 aa)
	H2XY62_CIOIN	AAA domain-containing protein; Belongs to the AAA ATPase family. (424 aa)
	ENSCINP00000034968	annotation not available (123 aa)
	H2Y1A0_CIOIN	Uncharacterized protein. (345 aa)
	H2Y3G4_CIOIN	BRCT domain-containing protein. (335 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCINP00000034968	F6WPB7_CIOIN	ENSCINP00000034968	ENSCINP00000009483	annotation not available	BRCC36_C domain-containing protein.	0.506
ENSCINP00000034968	H2XLY1_CIOIN	ENSCINP00000034968	ENSCINP00000030663	annotation not available	Uncharacterized protein.	0.714
F6SA18_CIOIN	F6TK51_CIOIN	ENSCINP00000026615	ENSCINP00000019452	Uncharacterized protein.	Uncharacterized protein.	0.455
F6SA18_CIOIN	F6WPB7_CIOIN	ENSCINP00000026615	ENSCINP00000009483	Uncharacterized protein.	BRCC36_C domain-containing protein.	0.407
F6SA18_CIOIN	H2XLY1_CIOIN	ENSCINP00000026615	ENSCINP00000030663	Uncharacterized protein.	Uncharacterized protein.	0.406
F6SA18_CIOIN	H2XY62_CIOIN	ENSCINP00000026615	ENSCINP00000034596	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.474
F6SA18_CIOIN	H2Y3G4_CIOIN	ENSCINP00000026615	ENSCINP00000036449	Uncharacterized protein.	BRCT domain-containing protein.	0.455
F6SA18_CIOIN	LOC108949301	ENSCINP00000026615	ENSCINP00000019451	Uncharacterized protein.	BRCT domain-containing protein.	0.455
F6TK51_CIOIN	F6SA18_CIOIN	ENSCINP00000019452	ENSCINP00000026615	Uncharacterized protein.	Uncharacterized protein.	0.455
F6TK51_CIOIN	F6WPB7_CIOIN	ENSCINP00000019452	ENSCINP00000009483	Uncharacterized protein.	BRCC36_C domain-containing protein.	0.442
F6TK51_CIOIN	F7AFQ9_CIOIN	ENSCINP00000019452	ENSCINP00000026033	Uncharacterized protein.	Uncharacterized protein.	0.512
F6TK51_CIOIN	H2XLY1_CIOIN	ENSCINP00000019452	ENSCINP00000030663	Uncharacterized protein.	Uncharacterized protein.	0.425
F6TK51_CIOIN	LOC100182426	ENSCINP00000019452	ENSCINP00000030108	Uncharacterized protein.	Uncharacterized protein.	0.540
F6TK51_CIOIN	LOC108949301	ENSCINP00000019452	ENSCINP00000019451	Uncharacterized protein.	BRCT domain-containing protein.	0.952
F6TK51_CIOIN	zf(ring)-23	ENSCINP00000019452	ENSCINP00000029036	Uncharacterized protein.	RING-type domain-containing protein.	0.556
F6WPB7_CIOIN	ENSCINP00000034968	ENSCINP00000009483	ENSCINP00000034968	BRCC36_C domain-containing protein.	annotation not available	0.506
F6WPB7_CIOIN	F6SA18_CIOIN	ENSCINP00000009483	ENSCINP00000026615	BRCC36_C domain-containing protein.	Uncharacterized protein.	0.407
F6WPB7_CIOIN	F6TK51_CIOIN	ENSCINP00000009483	ENSCINP00000019452	BRCC36_C domain-containing protein.	Uncharacterized protein.	0.442
F6WPB7_CIOIN	F7AFQ9_CIOIN	ENSCINP00000009483	ENSCINP00000026033	BRCC36_C domain-containing protein.	Uncharacterized protein.	0.406
F6WPB7_CIOIN	H2XLY1_CIOIN	ENSCINP00000009483	ENSCINP00000030663	BRCC36_C domain-containing protein.	Uncharacterized protein.	0.999