5 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100181511	S-phase kinase-associated protein 1; Belongs to the SKP1 family. (162 aa)
	F6PW28_CIOIN	CULLIN_2 domain-containing protein; Belongs to the cullin family. (778 aa)
	LOC100177208	S-phase kinase-associated protein 2. (453 aa)
	betaTrCP	Beta-transducin repeat-containing HOMOLOGUE protein. (621 aa)
	LOC100182516	RING-box protein 1. (104 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PW28_CIOIN	LOC100177208	ENSCINP00000013359	ENSCINP00000016594	CULLIN_2 domain-containing protein; Belongs to the cullin family.	S-phase kinase-associated protein 2.	0.998
F6PW28_CIOIN	LOC100181511	ENSCINP00000013359	ENSCINP00000003403	CULLIN_2 domain-containing protein; Belongs to the cullin family.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.998
F6PW28_CIOIN	LOC100182516	ENSCINP00000013359	ENSCINP00000031380	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RING-box protein 1.	0.998
F6PW28_CIOIN	betaTrCP	ENSCINP00000013359	ENSCINP00000018885	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Beta-transducin repeat-containing HOMOLOGUE protein.	0.978
LOC100177208	F6PW28_CIOIN	ENSCINP00000016594	ENSCINP00000013359	S-phase kinase-associated protein 2.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.998
LOC100177208	LOC100181511	ENSCINP00000016594	ENSCINP00000003403	S-phase kinase-associated protein 2.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.998
LOC100177208	LOC100182516	ENSCINP00000016594	ENSCINP00000031380	S-phase kinase-associated protein 2.	RING-box protein 1.	0.988
LOC100177208	betaTrCP	ENSCINP00000016594	ENSCINP00000018885	S-phase kinase-associated protein 2.	Beta-transducin repeat-containing HOMOLOGUE protein.	0.970
LOC100181511	F6PW28_CIOIN	ENSCINP00000003403	ENSCINP00000013359	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.998
LOC100181511	LOC100177208	ENSCINP00000003403	ENSCINP00000016594	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	S-phase kinase-associated protein 2.	0.998
LOC100181511	LOC100182516	ENSCINP00000003403	ENSCINP00000031380	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	RING-box protein 1.	0.999
LOC100181511	betaTrCP	ENSCINP00000003403	ENSCINP00000018885	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	Beta-transducin repeat-containing HOMOLOGUE protein.	0.997
LOC100182516	F6PW28_CIOIN	ENSCINP00000031380	ENSCINP00000013359	RING-box protein 1.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.998
LOC100182516	LOC100177208	ENSCINP00000031380	ENSCINP00000016594	RING-box protein 1.	S-phase kinase-associated protein 2.	0.988
LOC100182516	LOC100181511	ENSCINP00000031380	ENSCINP00000003403	RING-box protein 1.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.999
LOC100182516	betaTrCP	ENSCINP00000031380	ENSCINP00000018885	RING-box protein 1.	Beta-transducin repeat-containing HOMOLOGUE protein.	0.959
betaTrCP	F6PW28_CIOIN	ENSCINP00000018885	ENSCINP00000013359	Beta-transducin repeat-containing HOMOLOGUE protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.978
betaTrCP	LOC100177208	ENSCINP00000018885	ENSCINP00000016594	Beta-transducin repeat-containing HOMOLOGUE protein.	S-phase kinase-associated protein 2.	0.970
betaTrCP	LOC100181511	ENSCINP00000018885	ENSCINP00000003403	Beta-transducin repeat-containing HOMOLOGUE protein.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.997
betaTrCP	LOC100182516	ENSCINP00000018885	ENSCINP00000031380	Beta-transducin repeat-containing HOMOLOGUE protein.	RING-box protein 1.	0.959