STRINGSTRING
SSRP1 SSRP1 LOC100175005 LOC100175005 LOC100181739 LOC100181739 Zf(c2h2)-114 Zf(c2h2)-114 LOC100183995 LOC100183995 F6X618_CIOIN F6X618_CIOIN LOC100179515 LOC100179515 F6SJW4_CIOIN F6SJW4_CIOIN F7A363_CIOIN F7A363_CIOIN LOC100181502 LOC100181502 LOC100185111 LOC100185111 LOC100177214 LOC100177214 F6UE50_CIOIN F6UE50_CIOIN LOC100178698 LOC100178698 LOC100183594 LOC100183594 LOC100180927 LOC100180927 F6PPJ7_CIOIN F6PPJ7_CIOIN LOC100183139 LOC100183139 LOC100183393 LOC100183393 F6YSX7_CIOIN F6YSX7_CIOIN F6Y8T6_CIOIN F6Y8T6_CIOIN cgrp-rcp cgrp-rcp LOC100187539 LOC100187539 F6Z8X9_CIOIN F6Z8X9_CIOIN F6YGZ1_CIOIN F6YGZ1_CIOIN LOC100186426 LOC100186426 LOC100182348 LOC100182348 F7B658_CIOIN F7B658_CIOIN LOC100179613 LOC100179613 F7BMK8_CIOIN F7BMK8_CIOIN F6RMT1_CIOIN F6RMT1_CIOIN F6QNK0_CIOIN F6QNK0_CIOIN LOC100177778 LOC100177778 LOC100175194 LOC100175194 F6SKY6_CIOIN F6SKY6_CIOIN LOC100177816 LOC100177816 F7AWN2_CIOIN F7AWN2_CIOIN F7AWC6_CIOIN F7AWC6_CIOIN LOC100182171 LOC100182171 LOC100179181 LOC100179181 LOC100178614 LOC100178614 F6VS86_CIOIN F6VS86_CIOIN LOC100179943 LOC100179943 F6PY05_CIOIN F6PY05_CIOIN F6PX81_CIOIN F6PX81_CIOIN F6QR00_CIOIN F6QR00_CIOIN F6TZU9_CIOIN F6TZU9_CIOIN F6SAD5_CIOIN F6SAD5_CIOIN LOC100186818 LOC100186818 F6ZVH0_CIOIN F6ZVH0_CIOIN F6ZVG1_CIOIN F6ZVG1_CIOIN F6S7U3_CIOIN F6S7U3_CIOIN F6S7T3_CIOIN F6S7T3_CIOIN LOC100183513 LOC100183513 LOC100176328 LOC100176328 F6SJH8_CIOIN F6SJH8_CIOIN F6SJ61_CIOIN F6SJ61_CIOIN F6SIN5_CIOIN F6SIN5_CIOIN LOC100183293 LOC100183293 LOC100177272 LOC100177272 LOC100184400 LOC100184400 zf(ring)-55 zf(ring)-55 LOC100181260 LOC100181260 LOC494392 LOC494392 F7AGX6_CIOIN F7AGX6_CIOIN LOC100181821 LOC100181821 F6PKT6_CIOIN F6PKT6_CIOIN LOC100175816 LOC100175816 LOC100180649 LOC100180649 LOC100187240 LOC100187240 F6U8F8_CIOIN F6U8F8_CIOIN LOC100184759 LOC100184759 LOC100182343 LOC100182343 F6Y5Q3_CIOIN F6Y5Q3_CIOIN LOC100185119 LOC100185119 LOC100178283 LOC100178283 F6XIG6_CIOIN F6XIG6_CIOIN F6X941_CIOIN F6X941_CIOIN F6Z277_CIOIN F6Z277_CIOIN F6UKG9_CIOIN F6UKG9_CIOIN F7ATY3_CIOIN F7ATY3_CIOIN LOC100182246 LOC100182246 LOC104266855 LOC104266855 LOC100177537 LOC100177537 F6V2C0_CIOIN F6V2C0_CIOIN LOC100177176 LOC100177176 F6QQ72_CIOIN F6QQ72_CIOIN LOC100185828 LOC100185828 F6XB76_CIOIN F6XB76_CIOIN LOC100182642 LOC100182642 F7BHW5_CIOIN F7BHW5_CIOIN F6T8R8_CIOIN F6T8R8_CIOIN LOC100179010 LOC100179010 F6YZE6_CIOIN F6YZE6_CIOIN H2XJG6_CIOIN H2XJG6_CIOIN spt4 spt4 LOC113474223 LOC113474223 LOC100178802 LOC100178802 LOC100181341 LOC100181341 H2XLT6_CIOIN H2XLT6_CIOIN polr3k polr3k H2XMP8_CIOIN H2XMP8_CIOIN H2XNY4_CIOIN H2XNY4_CIOIN H2XP40_CIOIN H2XP40_CIOIN H2XPB0_CIOIN H2XPB0_CIOIN LOC100186007 LOC100186007 H2XQB7_CIOIN H2XQB7_CIOIN H2XR13_CIOIN H2XR13_CIOIN H2XSC8_CIOIN H2XSC8_CIOIN LOC101242260 LOC101242260 H2XTY0_CIOIN H2XTY0_CIOIN H2XU12_CIOIN H2XU12_CIOIN H2XUU5_CIOIN H2XUU5_CIOIN H2XVJ2_CIOIN H2XVJ2_CIOIN LOC100184165 LOC100184165 H2XW76_CIOIN H2XW76_CIOIN LOC100186200 LOC100186200 H2XZ54_CIOIN H2XZ54_CIOIN H2Y084_CIOIN H2Y084_CIOIN H2Y0B7_CIOIN H2Y0B7_CIOIN H2Y0J7_CIOIN H2Y0J7_CIOIN H2Y0S6_CIOIN H2Y0S6_CIOIN LOC100181738 LOC100181738 H2Y236_CIOIN H2Y236_CIOIN H2Y332_CIOIN H2Y332_CIOIN LOC100182496 LOC100182496 H2Y3S7_CIOIN H2Y3S7_CIOIN
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SSRP1FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (603 aa)
LOC100175005HTH TFE/IIEalpha-type domain-containing protein. (343 aa)
LOC100181739Uncharacterized protein. (259 aa)
Zf(c2h2)-114General transcription factor IIH subunit. (395 aa)
LOC100183995Uncharacterized protein. (575 aa)
F6X618_CIOINTranscription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (515 aa)
LOC100179515TFIIA-alpha and beta-like factor isoform X1. (332 aa)
F6SJW4_CIOINUncharacterized protein. (613 aa)
F7A363_CIOINTBP-binding domain-containing protein. (480 aa)
LOC100181502TFIID_20kDa domain-containing protein. (187 aa)
LOC100185111BTP domain-containing protein. (231 aa)
LOC100177214Uncharacterized protein. (316 aa)
F6UE50_CIOINBTP domain-containing protein. (671 aa)
LOC100178698Uncharacterized protein LOC100178698. (266 aa)
LOC100183594General transcription and DNA repair factor IIH helicase subunit XPB. (794 aa)
LOC100180927Uncharacterized protein LOC100180927. (266 aa)
F6PPJ7_CIOINUncharacterized protein. (205 aa)
LOC100183139Uncharacterized protein. (1035 aa)
LOC100183393DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1141 aa)
F6YSX7_CIOINRPOLD domain-containing protein. (345 aa)
F6Y8T6_CIOINTAFII55_N domain-containing protein. (166 aa)
cgrp-rcpCalcitonin gene-related Peptide receptor component protein. (124 aa)
LOC100187539TFIIS N-terminal domain-containing protein. (658 aa)
F6Z8X9_CIOINProtein kinase domain-containing protein; Belongs to the protein kinase superfamily. (346 aa)
F6YGZ1_CIOINUncharacterized protein. (587 aa)
LOC100186426Negative elongation factor B. (605 aa)
LOC100182348elongin-A3 member D isoform X2. (622 aa)
F7B658_CIOINTFIIB-type domain-containing protein. (658 aa)
LOC100179613Uncharacterized protein LOC100179613. (267 aa)
F7BMK8_CIOINUncharacterized protein. (243 aa)
F6RMT1_CIOINUncharacterized protein. (551 aa)
F6QNK0_CIOINTAF domain-containing protein. (263 aa)
LOC100177778DNA-directed RNA polymerase II subunit RPB7. (172 aa)
LOC100175194Hemocyanin A-type, units Ode to Odg-like. (552 aa)
F6SKY6_CIOINHDAg domain-containing protein. (537 aa)
LOC100177816cyclin-H; Belongs to the cyclin family. (329 aa)
F7AWN2_CIOINLisH domain-containing protein. (321 aa)
F7AWC6_CIOINWD_REPEATS_REGION domain-containing protein. (272 aa)
LOC100182171Negative elongation factor E-like. (308 aa)
LOC100179181Uncharacterized protein LOC100179181. (255 aa)
LOC100178614AF4/FMR2 family member 4 isoform X3. (1084 aa)
F6VS86_CIOINAHD domain-containing protein. (660 aa)
LOC100179943General transcription factor IIF subunit 2. (257 aa)
F6PY05_CIOINUncharacterized protein. (246 aa)
F6PX81_CIOINPlus3 domain-containing protein. (336 aa)
F6QR00_CIOINDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1183 aa)
F6TZU9_CIOINHelicase ATP-binding domain-containing protein. (810 aa)
F6SAD5_CIOINUncharacterized protein; Belongs to the cyclin family. (514 aa)
LOC100186818RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (520 aa)
F6ZVH0_CIOINUncharacterized protein. (205 aa)
F6ZVG1_CIOINUncharacterized protein; Belongs to the RNA polymerase beta chain family. (275 aa)
F6S7U3_CIOINGeneral transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (182 aa)
F6S7T3_CIOINGeneral transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (238 aa)
LOC100183513Uncharacterized protein LOC100183513. (265 aa)
LOC100176328Uncharacterized protein LOC100176328 isoform X1. (264 aa)
F6SJH8_CIOINS1 motif domain-containing protein. (450 aa)
F6SJ61_CIOINHTH_44 domain-containing protein. (505 aa)
F6SIN5_CIOINRNA_pol_Rpb1_5 domain-containing protein. (749 aa)
LOC100183293Transcription elongation factor A protein 1. (298 aa)
LOC100177272DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1814 aa)
LOC100184400DNA-directed RNA polymerase III subunit RPC4. (349 aa)
zf(ring)-55Zinc finger protein. (323 aa)
LOC100181260DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (215 aa)
LOC494392Uncharacterized protein LOC494392. (131 aa)
F7AGX6_CIOINUncharacterized protein. (238 aa)
LOC100181821Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily. (376 aa)
F6PKT6_CIOINRNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (822 aa)
LOC100175816TPR_REGION domain-containing protein. (1034 aa)
LOC100180649Uncharacterized protein LOC100180649 isoform X1. (248 aa)
LOC100187240Uncharacterized protein LOC100187240. (266 aa)
F6U8F8_CIOINTAFH domain-containing protein. (598 aa)
LOC100184759Uncharacterized protein LOC100184759. (255 aa)
LOC100182343Transcription initiation factor IIB-like. (314 aa)
F6Y5Q3_CIOINRPOLD domain-containing protein. (151 aa)
LOC100185119Uncharacterized protein LOC100185119. (266 aa)
LOC100178283DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
F6XIG6_CIOINRPOL4c domain-containing protein. (133 aa)
F6X941_CIOINUncharacterized protein. (296 aa)
F6Z277_CIOINUncharacterized protein. (210 aa)
F6UKG9_CIOINUncharacterized protein. (255 aa)
F7ATY3_CIOINUncharacterized protein. (121 aa)
LOC100182246RNA polymerase I-specific transcription initiation factor RRN3. (588 aa)
LOC104266855DNA-directed RNA polymerase III subunit RPC8-like. (205 aa)
LOC100177537Protein kinase domain-containing protein. (1105 aa)
F6V2C0_CIOINUncharacterized protein. (228 aa)
LOC100177176Uncharacterized protein. (181 aa)
F6QQ72_CIOINTyrosinase_Cu-bd domain-containing protein. (303 aa)
LOC100185828Uncharacterized protein LOC100185828. (221 aa)
F6XB76_CIOINSPT6_acidic domain-containing protein. (206 aa)
LOC100182642Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (354 aa)
F7BHW5_CIOINTranscription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (284 aa)
F6T8R8_CIOINDNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (311 aa)
LOC100179010Uncharacterized protein LOC100179010. (271 aa)
F6YZE6_CIOINUncharacterized protein. (166 aa)
H2XJG6_CIOINUncharacterized protein. (211 aa)
spt4Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (122 aa)
LOC113474223Uncharacterized protein LOC113474223. (245 aa)
LOC100178802Transcription elongation factor SPT5. (1047 aa)
LOC100181341DNA-directed RNA polymerase II subunit RPB11-a isoform X1. (117 aa)
H2XLT6_CIOINUncharacterized protein. (264 aa)
polr3kDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
H2XMP8_CIOINUncharacterized protein. (244 aa)
H2XNY4_CIOINEAF domain-containing protein. (241 aa)
H2XP40_CIOINRNA_pol_Rpb2_1 domain-containing protein. (178 aa)
H2XPB0_CIOINRPOLA_N domain-containing protein. (207 aa)
LOC100186007Uncharacterized protein LOC100186007. (252 aa)
H2XQB7_CIOINPHD-type domain-containing protein. (164 aa)
H2XR13_CIOINRNA_pol_Rpb2_6 domain-containing protein. (135 aa)
H2XSC8_CIOINUncharacterized protein. (217 aa)
LOC101242260DNA-directed RNA polymerases I, II, and III subunit RPABC4. (79 aa)
H2XTY0_CIOINUncharacterized protein. (204 aa)
H2XU12_CIOINUncharacterized protein. (189 aa)
H2XUU5_CIOINUncharacterized protein. (532 aa)
H2XVJ2_CIOINUncharacterized protein. (141 aa)
LOC100184165General transcription factor IIH subunit 3-like. (309 aa)
H2XW76_CIOINTAF domain-containing protein. (526 aa)
LOC100186200Uncharacterized protein LOC100186200. (248 aa)
H2XZ54_CIOINRPOLD domain-containing protein. (286 aa)
H2Y084_CIOINUncharacterized protein. (262 aa)
H2Y0B7_CIOINUncharacterized protein. (498 aa)
H2Y0J7_CIOINRPOLA_N domain-containing protein. (225 aa)
H2Y0S6_CIOINUncharacterized protein. (1003 aa)
LOC100181738Uncharacterized protein LOC100181738. (248 aa)
H2Y236_CIOINUncharacterized protein. (237 aa)
H2Y332_CIOINDUF3591 domain-containing protein. (202 aa)
LOC100182496Uncharacterized protein LOC100182496. (266 aa)
H2Y3S7_CIOINUncharacterized protein. (633 aa)
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
Server load: low (12%) [HD]