(10 nodes) Retinol metabolism network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6YG59_CIOIN	Uncharacterized protein. (91 aa)
	LOC100181359	Retinol dehydrogenase 14-like; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (305 aa)
	LOC100176963	Retinal dehydrogenase 1-like; Belongs to the aldehyde dehydrogenase family. (496 aa)
	F6W5P6_CIOIN	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (498 aa)
	LOC100180469	Retinal dehydrogenase 2. (538 aa)
	bco	Uncharacterized protein. (524 aa)
	LOC100179350	Retinol dehydrogenase 12-like isoform X1. (313 aa)
	H2XJL6_CIOIN	Uncharacterized protein. (259 aa)
	H2XJR2_CIOIN	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (314 aa)
	LOC100187443	Retinol dehydrogenase 12-like; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (331 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6W5P6_CIOIN	F6YG59_CIOIN	ENSCINP00000016076	ENSCINP00000008763	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.721
F6W5P6_CIOIN	H2XJL6_CIOIN	ENSCINP00000016076	ENSCINP00000029848	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.920
F6W5P6_CIOIN	H2XJR2_CIOIN	ENSCINP00000016076	ENSCINP00000029894	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.754
F6W5P6_CIOIN	LOC100179350	ENSCINP00000016076	ENSCINP00000023771	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Retinol dehydrogenase 12-like isoform X1.	0.721
F6W5P6_CIOIN	LOC100181359	ENSCINP00000016076	ENSCINP00000010791	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Retinol dehydrogenase 14-like; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.723
F6W5P6_CIOIN	LOC100187443	ENSCINP00000016076	ENSCINP00000034556	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Retinol dehydrogenase 12-like; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.721
F6W5P6_CIOIN	bco	ENSCINP00000016076	ENSCINP00000019492	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.915
F6YG59_CIOIN	F6W5P6_CIOIN	ENSCINP00000008763	ENSCINP00000016076	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.721
F6YG59_CIOIN	H2XJL6_CIOIN	ENSCINP00000008763	ENSCINP00000029848	Uncharacterized protein.	Uncharacterized protein.	0.910
F6YG59_CIOIN	H2XJR2_CIOIN	ENSCINP00000008763	ENSCINP00000029894	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.910
F6YG59_CIOIN	LOC100176963	ENSCINP00000008763	ENSCINP00000016054	Uncharacterized protein.	Retinal dehydrogenase 1-like; Belongs to the aldehyde dehydrogenase family.	0.721
F6YG59_CIOIN	LOC100179350	ENSCINP00000008763	ENSCINP00000023771	Uncharacterized protein.	Retinol dehydrogenase 12-like isoform X1.	0.900
F6YG59_CIOIN	LOC100180469	ENSCINP00000008763	ENSCINP00000016285	Uncharacterized protein.	Retinal dehydrogenase 2.	0.721
F6YG59_CIOIN	LOC100181359	ENSCINP00000008763	ENSCINP00000010791	Uncharacterized protein.	Retinol dehydrogenase 14-like; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.900
F6YG59_CIOIN	LOC100187443	ENSCINP00000008763	ENSCINP00000034556	Uncharacterized protein.	Retinol dehydrogenase 12-like; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.900
F6YG59_CIOIN	bco	ENSCINP00000008763	ENSCINP00000019492	Uncharacterized protein.	Uncharacterized protein.	0.904
H2XJL6_CIOIN	F6W5P6_CIOIN	ENSCINP00000029848	ENSCINP00000016076	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.920
H2XJL6_CIOIN	F6YG59_CIOIN	ENSCINP00000029848	ENSCINP00000008763	Uncharacterized protein.	Uncharacterized protein.	0.910
H2XJL6_CIOIN	H2XJR2_CIOIN	ENSCINP00000029848	ENSCINP00000029894	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.930
H2XJL6_CIOIN	LOC100176963	ENSCINP00000029848	ENSCINP00000016054	Uncharacterized protein.	Retinal dehydrogenase 1-like; Belongs to the aldehyde dehydrogenase family.	0.920