22 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100185508	WD repeat-containing protein 43. (630 aa)
	LOC100183259	Uncharacterized protein. (721 aa)
	LOC100175516	Uncharacterized protein. (603 aa)
	F6UDJ0_CIOIN	Uncharacterized protein. (1742 aa)
	LOC100178939	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (579 aa)
	F6QDE3_CIOIN	Bms1-type G domain-containing protein. (1061 aa)
	F6ZN98_CIOIN	DRIM domain-containing protein. (2648 aa)
	F6Y8C3_CIOIN	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (956 aa)
	LOC100180728	WD_REPEATS_REGION domain-containing protein. (453 aa)
	LOC100186181	rRNA 2'-O-methyltransferase fibrillarin. (308 aa)
	F7BQ53_CIOIN	WD_REPEATS_REGION domain-containing protein. (501 aa)
	F6U609_CIOIN	Nop domain-containing protein. (533 aa)
	LOC100183227	WD_REPEATS_REGION domain-containing protein. (708 aa)
	LOC100186454	Uncharacterized protein. (907 aa)
	LOC100180054	U3 small nucleolar RNA-associated protein 4 homolog. (666 aa)
	F6WWW4_CIOIN	WD_REPEATS_REGION domain-containing protein. (786 aa)
	LOC100180269	Uncharacterized protein. (866 aa)
	H2XTN0_CIOIN	Uncharacterized protein. (370 aa)
	LOC100178209	Nop domain-containing protein. (561 aa)
	H2XXU4_CIOIN	Uncharacterized protein. (275 aa)
	LOC100184042	Uncharacterized protein. (611 aa)
	LOC100182620	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6QDE3_CIOIN	F6U609_CIOIN	ENSCINP00000006493	ENSCINP00000011290	Bms1-type G domain-containing protein.	Nop domain-containing protein.	0.996
F6QDE3_CIOIN	F6UDJ0_CIOIN	ENSCINP00000006493	ENSCINP00000005538	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.999
F6QDE3_CIOIN	F6WWW4_CIOIN	ENSCINP00000006493	ENSCINP00000019387	Bms1-type G domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
F6QDE3_CIOIN	F6Y8C3_CIOIN	ENSCINP00000006493	ENSCINP00000007371	Bms1-type G domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.999
F6QDE3_CIOIN	F6ZN98_CIOIN	ENSCINP00000006493	ENSCINP00000006949	Bms1-type G domain-containing protein.	DRIM domain-containing protein.	0.999
F6QDE3_CIOIN	F7BQ53_CIOIN	ENSCINP00000006493	ENSCINP00000010927	Bms1-type G domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.997
F6QDE3_CIOIN	H2XTN0_CIOIN	ENSCINP00000006493	ENSCINP00000033014	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.999
F6QDE3_CIOIN	H2XXU4_CIOIN	ENSCINP00000006493	ENSCINP00000034478	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.996
F6QDE3_CIOIN	LOC100175516	ENSCINP00000006493	ENSCINP00000004018	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.999
F6QDE3_CIOIN	LOC100178209	ENSCINP00000006493	ENSCINP00000034401	Bms1-type G domain-containing protein.	Nop domain-containing protein.	0.998
F6QDE3_CIOIN	LOC100178939	ENSCINP00000006493	ENSCINP00000005569	Bms1-type G domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.999
F6QDE3_CIOIN	LOC100180054	ENSCINP00000006493	ENSCINP00000013847	Bms1-type G domain-containing protein.	U3 small nucleolar RNA-associated protein 4 homolog.	0.999
F6QDE3_CIOIN	LOC100180269	ENSCINP00000006493	ENSCINP00000032357	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.999
F6QDE3_CIOIN	LOC100180728	ENSCINP00000006493	ENSCINP00000010082	Bms1-type G domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.994
F6QDE3_CIOIN	LOC100182620	ENSCINP00000006493	ENSCINP00000036504	Bms1-type G domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.987
F6QDE3_CIOIN	LOC100183227	ENSCINP00000006493	ENSCINP00000011688	Bms1-type G domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
F6QDE3_CIOIN	LOC100183259	ENSCINP00000006493	ENSCINP00000000681	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.999
F6QDE3_CIOIN	LOC100184042	ENSCINP00000006493	ENSCINP00000035636	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.998
F6QDE3_CIOIN	LOC100185508	ENSCINP00000006493	ENSCINP00000000608	Bms1-type G domain-containing protein.	WD repeat-containing protein 43.	0.998
F6QDE3_CIOIN	LOC100186181	ENSCINP00000006493	ENSCINP00000010410	Bms1-type G domain-containing protein.	rRNA 2'-O-methyltransferase fibrillarin.	0.992