12 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100185508	WD repeat-containing protein 43. (630 aa)
	LOC100178939	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (579 aa)
	LOC100180728	WD_REPEATS_REGION domain-containing protein. (453 aa)
	LOC100186181	rRNA 2'-O-methyltransferase fibrillarin. (308 aa)
	F7BQ53_CIOIN	WD_REPEATS_REGION domain-containing protein. (501 aa)
	F6U609_CIOIN	Nop domain-containing protein. (533 aa)
	LOC100180054	U3 small nucleolar RNA-associated protein 4 homolog. (666 aa)
	F6WWW4_CIOIN	WD_REPEATS_REGION domain-containing protein. (786 aa)
	H2XTN0_CIOIN	Uncharacterized protein. (370 aa)
	LOC100178209	Nop domain-containing protein. (561 aa)
	LOC100184042	Uncharacterized protein. (611 aa)
	LOC100182620	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6U609_CIOIN	F6WWW4_CIOIN	ENSCINP00000011290	ENSCINP00000019387	Nop domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
F6U609_CIOIN	F7BQ53_CIOIN	ENSCINP00000011290	ENSCINP00000010927	Nop domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.997
F6U609_CIOIN	H2XTN0_CIOIN	ENSCINP00000011290	ENSCINP00000033014	Nop domain-containing protein.	Uncharacterized protein.	0.997
F6U609_CIOIN	LOC100178209	ENSCINP00000011290	ENSCINP00000034401	Nop domain-containing protein.	Nop domain-containing protein.	0.999
F6U609_CIOIN	LOC100178939	ENSCINP00000011290	ENSCINP00000005569	Nop domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.998
F6U609_CIOIN	LOC100180054	ENSCINP00000011290	ENSCINP00000013847	Nop domain-containing protein.	U3 small nucleolar RNA-associated protein 4 homolog.	0.999
F6U609_CIOIN	LOC100180728	ENSCINP00000011290	ENSCINP00000010082	Nop domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
F6U609_CIOIN	LOC100182620	ENSCINP00000011290	ENSCINP00000036504	Nop domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.999
F6U609_CIOIN	LOC100184042	ENSCINP00000011290	ENSCINP00000035636	Nop domain-containing protein.	Uncharacterized protein.	0.995
F6U609_CIOIN	LOC100185508	ENSCINP00000011290	ENSCINP00000000608	Nop domain-containing protein.	WD repeat-containing protein 43.	0.999
F6U609_CIOIN	LOC100186181	ENSCINP00000011290	ENSCINP00000010410	Nop domain-containing protein.	rRNA 2'-O-methyltransferase fibrillarin.	0.999
F6WWW4_CIOIN	F6U609_CIOIN	ENSCINP00000019387	ENSCINP00000011290	WD_REPEATS_REGION domain-containing protein.	Nop domain-containing protein.	0.998
F6WWW4_CIOIN	F7BQ53_CIOIN	ENSCINP00000019387	ENSCINP00000010927	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.996
F6WWW4_CIOIN	H2XTN0_CIOIN	ENSCINP00000019387	ENSCINP00000033014	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
F6WWW4_CIOIN	LOC100178209	ENSCINP00000019387	ENSCINP00000034401	WD_REPEATS_REGION domain-containing protein.	Nop domain-containing protein.	0.992
F6WWW4_CIOIN	LOC100178939	ENSCINP00000019387	ENSCINP00000005569	WD_REPEATS_REGION domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.997
F6WWW4_CIOIN	LOC100180054	ENSCINP00000019387	ENSCINP00000013847	WD_REPEATS_REGION domain-containing protein.	U3 small nucleolar RNA-associated protein 4 homolog.	0.999
F6WWW4_CIOIN	LOC100180728	ENSCINP00000019387	ENSCINP00000010082	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
F6WWW4_CIOIN	LOC100182620	ENSCINP00000019387	ENSCINP00000036504	WD_REPEATS_REGION domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.967
F6WWW4_CIOIN	LOC100184042	ENSCINP00000019387	ENSCINP00000035636	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999