5 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F7BQ53_CIOIN	WD_REPEATS_REGION domain-containing protein. (501 aa)
	LOC100180054	U3 small nucleolar RNA-associated protein 4 homolog. (666 aa)
	F6WWW4_CIOIN	WD_REPEATS_REGION domain-containing protein. (786 aa)
	H2XTN0_CIOIN	Uncharacterized protein. (370 aa)
	LOC100184042	Uncharacterized protein. (611 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6WWW4_CIOIN	F7BQ53_CIOIN	ENSCINP00000019387	ENSCINP00000010927	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.996
F6WWW4_CIOIN	H2XTN0_CIOIN	ENSCINP00000019387	ENSCINP00000033014	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
F6WWW4_CIOIN	LOC100180054	ENSCINP00000019387	ENSCINP00000013847	WD_REPEATS_REGION domain-containing protein.	U3 small nucleolar RNA-associated protein 4 homolog.	0.999
F6WWW4_CIOIN	LOC100184042	ENSCINP00000019387	ENSCINP00000035636	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
F7BQ53_CIOIN	F6WWW4_CIOIN	ENSCINP00000010927	ENSCINP00000019387	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.996
F7BQ53_CIOIN	H2XTN0_CIOIN	ENSCINP00000010927	ENSCINP00000033014	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
F7BQ53_CIOIN	LOC100180054	ENSCINP00000010927	ENSCINP00000013847	WD_REPEATS_REGION domain-containing protein.	U3 small nucleolar RNA-associated protein 4 homolog.	0.999
F7BQ53_CIOIN	LOC100184042	ENSCINP00000010927	ENSCINP00000035636	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
H2XTN0_CIOIN	F6WWW4_CIOIN	ENSCINP00000033014	ENSCINP00000019387	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
H2XTN0_CIOIN	F7BQ53_CIOIN	ENSCINP00000033014	ENSCINP00000010927	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
H2XTN0_CIOIN	LOC100180054	ENSCINP00000033014	ENSCINP00000013847	Uncharacterized protein.	U3 small nucleolar RNA-associated protein 4 homolog.	0.999
H2XTN0_CIOIN	LOC100184042	ENSCINP00000033014	ENSCINP00000035636	Uncharacterized protein.	Uncharacterized protein.	0.999
LOC100180054	F6WWW4_CIOIN	ENSCINP00000013847	ENSCINP00000019387	U3 small nucleolar RNA-associated protein 4 homolog.	WD_REPEATS_REGION domain-containing protein.	0.999
LOC100180054	F7BQ53_CIOIN	ENSCINP00000013847	ENSCINP00000010927	U3 small nucleolar RNA-associated protein 4 homolog.	WD_REPEATS_REGION domain-containing protein.	0.999
LOC100180054	H2XTN0_CIOIN	ENSCINP00000013847	ENSCINP00000033014	U3 small nucleolar RNA-associated protein 4 homolog.	Uncharacterized protein.	0.999
LOC100180054	LOC100184042	ENSCINP00000013847	ENSCINP00000035636	U3 small nucleolar RNA-associated protein 4 homolog.	Uncharacterized protein.	0.999
LOC100184042	F6WWW4_CIOIN	ENSCINP00000035636	ENSCINP00000019387	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
LOC100184042	F7BQ53_CIOIN	ENSCINP00000035636	ENSCINP00000010927	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998
LOC100184042	H2XTN0_CIOIN	ENSCINP00000035636	ENSCINP00000033014	Uncharacterized protein.	Uncharacterized protein.	0.999
LOC100184042	LOC100180054	ENSCINP00000035636	ENSCINP00000013847	Uncharacterized protein.	U3 small nucleolar RNA-associated protein 4 homolog.	0.999