5 items (Ciona intestinalis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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Predicted Interactions

gene neighborhood

gene fusions

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protein homology

Your Input:
	F6QDE3_CIOIN	Bms1-type G domain-containing protein. (1061 aa)
	F6Y8C3_CIOIN	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (956 aa)
	LOC100183227	WD_REPEATS_REGION domain-containing protein. (708 aa)
	LOC100186454	Uncharacterized protein. (907 aa)
	H2XXU4_CIOIN	Uncharacterized protein. (275 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6QDE3_CIOIN	F6Y8C3_CIOIN	ENSCINP00000006493	ENSCINP00000007371	Bms1-type G domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.999
F6QDE3_CIOIN	H2XXU4_CIOIN	ENSCINP00000006493	ENSCINP00000034478	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.996
F6QDE3_CIOIN	LOC100183227	ENSCINP00000006493	ENSCINP00000011688	Bms1-type G domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
F6QDE3_CIOIN	LOC100186454	ENSCINP00000006493	ENSCINP00000011758	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.999
F6Y8C3_CIOIN	F6QDE3_CIOIN	ENSCINP00000007371	ENSCINP00000006493	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Bms1-type G domain-containing protein.	0.999
F6Y8C3_CIOIN	H2XXU4_CIOIN	ENSCINP00000007371	ENSCINP00000034478	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.997
F6Y8C3_CIOIN	LOC100183227	ENSCINP00000007371	ENSCINP00000011688	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	WD_REPEATS_REGION domain-containing protein.	0.998
F6Y8C3_CIOIN	LOC100186454	ENSCINP00000007371	ENSCINP00000011758	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.996
H2XXU4_CIOIN	F6QDE3_CIOIN	ENSCINP00000034478	ENSCINP00000006493	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.996
H2XXU4_CIOIN	F6Y8C3_CIOIN	ENSCINP00000034478	ENSCINP00000007371	Uncharacterized protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.997
H2XXU4_CIOIN	LOC100183227	ENSCINP00000034478	ENSCINP00000011688	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.997
H2XXU4_CIOIN	LOC100186454	ENSCINP00000034478	ENSCINP00000011758	Uncharacterized protein.	Uncharacterized protein.	0.992
LOC100183227	F6QDE3_CIOIN	ENSCINP00000011688	ENSCINP00000006493	WD_REPEATS_REGION domain-containing protein.	Bms1-type G domain-containing protein.	0.999
LOC100183227	F6Y8C3_CIOIN	ENSCINP00000011688	ENSCINP00000007371	WD_REPEATS_REGION domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.998
LOC100183227	H2XXU4_CIOIN	ENSCINP00000011688	ENSCINP00000034478	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.997
LOC100183227	LOC100186454	ENSCINP00000011688	ENSCINP00000011758	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
LOC100186454	F6QDE3_CIOIN	ENSCINP00000011758	ENSCINP00000006493	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.999
LOC100186454	F6Y8C3_CIOIN	ENSCINP00000011758	ENSCINP00000007371	Uncharacterized protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.996
LOC100186454	H2XXU4_CIOIN	ENSCINP00000011758	ENSCINP00000034478	Uncharacterized protein.	Uncharacterized protein.	0.992
LOC100186454	LOC100183227	ENSCINP00000011758	ENSCINP00000011688	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999