6 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100184403	Uncharacterized protein. (237 aa)
	F6TAD8_CIOIN	CBF domain-containing protein. (511 aa)
	LOC100178413	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (358 aa)
	LOC100179273	Sas10 domain-containing protein. (465 aa)
	H2XQ81_CIOIN	PINc domain-containing protein. (201 aa)
	H2XWG7_CIOIN	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (233 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6TAD8_CIOIN	H2XQ81_CIOIN	ENSCINP00000022325	ENSCINP00000031815	CBF domain-containing protein.	PINc domain-containing protein.	0.992
F6TAD8_CIOIN	H2XWG7_CIOIN	ENSCINP00000022325	ENSCINP00000034001	CBF domain-containing protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.997
F6TAD8_CIOIN	LOC100178413	ENSCINP00000022325	ENSCINP00000030415	CBF domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
F6TAD8_CIOIN	LOC100179273	ENSCINP00000022325	ENSCINP00000030416	CBF domain-containing protein.	Sas10 domain-containing protein.	0.999
F6TAD8_CIOIN	LOC100184403	ENSCINP00000022325	ENSCINP00000020009	CBF domain-containing protein.	Uncharacterized protein.	0.999
H2XQ81_CIOIN	F6TAD8_CIOIN	ENSCINP00000031815	ENSCINP00000022325	PINc domain-containing protein.	CBF domain-containing protein.	0.992
H2XQ81_CIOIN	H2XWG7_CIOIN	ENSCINP00000031815	ENSCINP00000034001	PINc domain-containing protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.997
H2XQ81_CIOIN	LOC100178413	ENSCINP00000031815	ENSCINP00000030415	PINc domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.998
H2XQ81_CIOIN	LOC100179273	ENSCINP00000031815	ENSCINP00000030416	PINc domain-containing protein.	Sas10 domain-containing protein.	0.997
H2XQ81_CIOIN	LOC100184403	ENSCINP00000031815	ENSCINP00000020009	PINc domain-containing protein.	Uncharacterized protein.	0.997
H2XWG7_CIOIN	F6TAD8_CIOIN	ENSCINP00000034001	ENSCINP00000022325	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	CBF domain-containing protein.	0.997
H2XWG7_CIOIN	H2XQ81_CIOIN	ENSCINP00000034001	ENSCINP00000031815	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	PINc domain-containing protein.	0.997
H2XWG7_CIOIN	LOC100178413	ENSCINP00000034001	ENSCINP00000030415	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
H2XWG7_CIOIN	LOC100179273	ENSCINP00000034001	ENSCINP00000030416	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Sas10 domain-containing protein.	0.999
H2XWG7_CIOIN	LOC100184403	ENSCINP00000034001	ENSCINP00000020009	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.994
LOC100178413	F6TAD8_CIOIN	ENSCINP00000030415	ENSCINP00000022325	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	CBF domain-containing protein.	0.999
LOC100178413	H2XQ81_CIOIN	ENSCINP00000030415	ENSCINP00000031815	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	PINc domain-containing protein.	0.998
LOC100178413	H2XWG7_CIOIN	ENSCINP00000030415	ENSCINP00000034001	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.999
LOC100178413	LOC100179273	ENSCINP00000030415	ENSCINP00000030416	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Sas10 domain-containing protein.	0.999
LOC100178413	LOC100184403	ENSCINP00000030415	ENSCINP00000020009	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.999