21 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6Y8C3_CIOIN	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (956 aa)
	LOC100184403	Uncharacterized protein. (237 aa)
	F6TU78_CIOIN	DUF2431 domain-containing protein. (203 aa)
	F6PZV6_CIOIN	Methyltranfer_dom domain-containing protein. (518 aa)
	F6QG58_CIOIN	FtsJ domain-containing protein. (202 aa)
	LOC100176801	Multifunctional methyltransferase subunit TRM112-like protein. (131 aa)
	LOC100180306	Uncharacterized protein. (220 aa)
	F6QVW6_CIOIN	Uncharacterized protein. (319 aa)
	LOC100184601	Methyltransferase-like protein 5 isoform X4. (214 aa)
	H2XZT6_CIOIN	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (682 aa)
	H2XZ35_CIOIN	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (423 aa)
	H2XWZ3_CIOIN	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (736 aa)
	H2XS72_CIOIN	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (378 aa)
	F6QPL4_CIOIN	Uncharacterized protein. (286 aa)
	LOC100181113	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (198 aa)
	F6TFE2_CIOIN	Uncharacterized protein. (283 aa)
	LOC100186181	rRNA 2'-O-methyltransferase fibrillarin. (308 aa)
	F6U2M6_CIOIN	PUA domain-containing protein. (528 aa)
	LOC100181797	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (384 aa)
	F6U6C0_CIOIN	PseudoU_synth_2 domain-containing protein. (339 aa)
	H2XRA6_CIOIN	Uncharacterized protein. (142 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6QG58_CIOIN	F6QVW6_CIOIN	ENSCINP00000025277	ENSCINP00000001567	FtsJ domain-containing protein.	Uncharacterized protein.	0.437
F6QG58_CIOIN	F6U2M6_CIOIN	ENSCINP00000025277	ENSCINP00000009502	FtsJ domain-containing protein.	PUA domain-containing protein.	0.504
F6QG58_CIOIN	F6U6C0_CIOIN	ENSCINP00000025277	ENSCINP00000007760	FtsJ domain-containing protein.	PseudoU_synth_2 domain-containing protein.	0.413
F6QG58_CIOIN	F6Y8C3_CIOIN	ENSCINP00000025277	ENSCINP00000007371	FtsJ domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.419
F6QG58_CIOIN	H2XS72_CIOIN	ENSCINP00000025277	ENSCINP00000032506	FtsJ domain-containing protein.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.627
F6QG58_CIOIN	H2XZ35_CIOIN	ENSCINP00000025277	ENSCINP00000034919	FtsJ domain-containing protein.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.451
F6QG58_CIOIN	H2XZT6_CIOIN	ENSCINP00000025277	ENSCINP00000035170	FtsJ domain-containing protein.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.451
F6QG58_CIOIN	LOC100181797	ENSCINP00000025277	ENSCINP00000008063	FtsJ domain-containing protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.414
F6QG58_CIOIN	LOC100184403	ENSCINP00000025277	ENSCINP00000020009	FtsJ domain-containing protein.	Uncharacterized protein.	0.404
F6QG58_CIOIN	LOC100186181	ENSCINP00000025277	ENSCINP00000010410	FtsJ domain-containing protein.	rRNA 2'-O-methyltransferase fibrillarin.	0.588
F6QPL4_CIOIN	LOC100176801	ENSCINP00000013585	ENSCINP00000035260	Uncharacterized protein.	Multifunctional methyltransferase subunit TRM112-like protein.	0.530
F6QPL4_CIOIN	LOC100184601	ENSCINP00000013585	ENSCINP00000002208	Uncharacterized protein.	Methyltransferase-like protein 5 isoform X4.	0.642
F6QVW6_CIOIN	F6QG58_CIOIN	ENSCINP00000001567	ENSCINP00000025277	Uncharacterized protein.	FtsJ domain-containing protein.	0.437
F6QVW6_CIOIN	F6U6C0_CIOIN	ENSCINP00000001567	ENSCINP00000007760	Uncharacterized protein.	PseudoU_synth_2 domain-containing protein.	0.486
F6QVW6_CIOIN	H2XRA6_CIOIN	ENSCINP00000001567	ENSCINP00000032190	Uncharacterized protein.	Uncharacterized protein.	0.419
F6QVW6_CIOIN	LOC100180306	ENSCINP00000001567	ENSCINP00000036048	Uncharacterized protein.	Uncharacterized protein.	0.419
F6QVW6_CIOIN	LOC100181797	ENSCINP00000001567	ENSCINP00000008063	Uncharacterized protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.536
F6QVW6_CIOIN	LOC100184601	ENSCINP00000001567	ENSCINP00000002208	Uncharacterized protein.	Methyltransferase-like protein 5 isoform X4.	0.491
F6TFE2_CIOIN	F6Y8C3_CIOIN	ENSCINP00000011599	ENSCINP00000007371	Uncharacterized protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.597
F6TFE2_CIOIN	H2XWZ3_CIOIN	ENSCINP00000011599	ENSCINP00000034177	Uncharacterized protein.	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	0.716