(25 nodes) Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6QKM5_CIOIN	Mago-bind domain-containing protein. (209 aa)
	H2XXL6_CIOIN	C3H1-type domain-containing protein. (1528 aa)
	H2XWR8_CIOIN	Nudix hydrolase domain-containing protein. (235 aa)
	H2XV25_CIOIN	Uncharacterized protein. (652 aa)
	H2XQK9_CIOIN	Uncharacterized protein. (836 aa)
	H2XPJ8_CIOIN	AAA_11 domain-containing protein. (210 aa)
	H2XMY5_CIOIN	Uncharacterized protein. (281 aa)
	F6WP26_CIOIN	Uncharacterized protein. (292 aa)
	F6PIQ0_CIOIN	PINc domain-containing protein. (485 aa)
	F6PKJ4_CIOIN	MIF4G domain-containing protein. (795 aa)
	F6WCU4_CIOIN	Uncharacterized protein. (954 aa)
	F6XS77_CIOIN	Smg4_UPF3 domain-containing protein. (197 aa)
	H2Y3J0_CIOIN	Uncharacterized protein. (176 aa)
	F6UQQ5_CIOIN	Uncharacterized protein. (382 aa)
	F6XF93_CIOIN	Uncharacterized protein. (410 aa)
	F6V093_CIOIN	Uncharacterized protein. (325 aa)
	H2Y0W5_CIOIN	FATC domain-containing protein. (201 aa)
	F6U4L6_CIOIN	Uncharacterized protein. (1158 aa)
	LOC100185146	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (164 aa)
	F7ALJ6_CIOIN	Uncharacterized protein. (886 aa)
	H2Y233_CIOIN	Nuclear cap-binding protein subunit 2. (185 aa)
	F6SZZ3_CIOIN	Uncharacterized protein. (192 aa)
	LOC100184300	Uncharacterized protein. (147 aa)
	LOC100175820	Eukaryotic peptide chain release factor subunit 1. (434 aa)
	H2Y3Q2_CIOIN	Btz domain-containing protein. (394 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PIQ0_CIOIN	F6PKJ4_CIOIN	ENSCINP00000020219	ENSCINP00000018247	PINc domain-containing protein.	MIF4G domain-containing protein.	0.667
F6PIQ0_CIOIN	F6SZZ3_CIOIN	ENSCINP00000020219	ENSCINP00000005880	PINc domain-containing protein.	Uncharacterized protein.	0.622
F6PIQ0_CIOIN	F6V093_CIOIN	ENSCINP00000020219	ENSCINP00000014270	PINc domain-containing protein.	Uncharacterized protein.	0.875
F6PIQ0_CIOIN	F6WCU4_CIOIN	ENSCINP00000020219	ENSCINP00000017766	PINc domain-containing protein.	Uncharacterized protein.	0.894
F6PIQ0_CIOIN	F6XF93_CIOIN	ENSCINP00000020219	ENSCINP00000016005	PINc domain-containing protein.	Uncharacterized protein.	0.506
F6PIQ0_CIOIN	F6XS77_CIOIN	ENSCINP00000020219	ENSCINP00000017124	PINc domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.822
F6PIQ0_CIOIN	F7ALJ6_CIOIN	ENSCINP00000020219	ENSCINP00000008687	PINc domain-containing protein.	Uncharacterized protein.	0.641
F6PIQ0_CIOIN	H2XMY5_CIOIN	ENSCINP00000020219	ENSCINP00000031018	PINc domain-containing protein.	Uncharacterized protein.	0.444
F6PIQ0_CIOIN	H2XQK9_CIOIN	ENSCINP00000020219	ENSCINP00000031943	PINc domain-containing protein.	Uncharacterized protein.	0.821
F6PIQ0_CIOIN	H2XV25_CIOIN	ENSCINP00000020219	ENSCINP00000033509	PINc domain-containing protein.	Uncharacterized protein.	0.444
F6PIQ0_CIOIN	H2Y0W5_CIOIN	ENSCINP00000020219	ENSCINP00000035549	PINc domain-containing protein.	FATC domain-containing protein.	0.444
F6PIQ0_CIOIN	H2Y233_CIOIN	ENSCINP00000020219	ENSCINP00000035968	PINc domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.663
F6PIQ0_CIOIN	H2Y3J0_CIOIN	ENSCINP00000020219	ENSCINP00000036475	PINc domain-containing protein.	Uncharacterized protein.	0.961
F6PIQ0_CIOIN	H2Y3Q2_CIOIN	ENSCINP00000020219	ENSCINP00000036537	PINc domain-containing protein.	Btz domain-containing protein.	0.510
F6PIQ0_CIOIN	LOC100175820	ENSCINP00000020219	ENSCINP00000004702	PINc domain-containing protein.	Eukaryotic peptide chain release factor subunit 1.	0.453
F6PIQ0_CIOIN	LOC100184300	ENSCINP00000020219	ENSCINP00000005510	PINc domain-containing protein.	Uncharacterized protein.	0.534
F6PIQ0_CIOIN	LOC100185146	ENSCINP00000020219	ENSCINP00000010079	PINc domain-containing protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.633
F6PKJ4_CIOIN	F6PIQ0_CIOIN	ENSCINP00000018247	ENSCINP00000020219	MIF4G domain-containing protein.	PINc domain-containing protein.	0.667
F6PKJ4_CIOIN	F6SZZ3_CIOIN	ENSCINP00000018247	ENSCINP00000005880	MIF4G domain-containing protein.	Uncharacterized protein.	0.734
F6PKJ4_CIOIN	F6U4L6_CIOIN	ENSCINP00000018247	ENSCINP00000011555	MIF4G domain-containing protein.	Uncharacterized protein.	0.422