11 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100182620	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	LOC100177411	RuvB-like helicase; Belongs to the RuvB family. (467 aa)
	F6QNB6_CIOIN	Uncharacterized protein. (157 aa)
	LOC100183367	RuvB-like helicase; Belongs to the RuvB family. (456 aa)
	F6RIF9_CIOIN	HIT-type domain-containing protein. (122 aa)
	F6VH72_CIOIN	CS domain-containing protein. (441 aa)
	Zf(c2h2)-101	C2H2-type domain-containing protein. (212 aa)
	H2XL08_CIOIN	HIT-type domain-containing protein. (374 aa)
	H2XP61_CIOIN	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (236 aa)
	LOC100181271	PIH1 domain-containing protein 2. (336 aa)
	H2XZE6_CIOIN	HIT-type domain-containing protein. (129 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6QNB6_CIOIN	H2XZE6_CIOIN	ENSCINP00000009733	ENSCINP00000035030	Uncharacterized protein.	HIT-type domain-containing protein.	0.447
F6RIF9_CIOIN	H2XZE6_CIOIN	ENSCINP00000013483	ENSCINP00000035030	HIT-type domain-containing protein.	HIT-type domain-containing protein.	0.811
F6RIF9_CIOIN	LOC100177411	ENSCINP00000013483	ENSCINP00000009659	HIT-type domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.546
F6RIF9_CIOIN	LOC100183367	ENSCINP00000013483	ENSCINP00000009992	HIT-type domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.510
F6VH72_CIOIN	H2XP61_CIOIN	ENSCINP00000016398	ENSCINP00000031444	CS domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.740
F6VH72_CIOIN	LOC100177411	ENSCINP00000016398	ENSCINP00000009659	CS domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.600
F6VH72_CIOIN	LOC100182620	ENSCINP00000016398	ENSCINP00000036504	CS domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.484
F6VH72_CIOIN	LOC100183367	ENSCINP00000016398	ENSCINP00000009992	CS domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.636
H2XL08_CIOIN	H2XZE6_CIOIN	ENSCINP00000030340	ENSCINP00000035030	HIT-type domain-containing protein.	HIT-type domain-containing protein.	0.480
H2XL08_CIOIN	LOC100183367	ENSCINP00000030340	ENSCINP00000009992	HIT-type domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.422
H2XP61_CIOIN	F6VH72_CIOIN	ENSCINP00000031444	ENSCINP00000016398	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	CS domain-containing protein.	0.740
H2XP61_CIOIN	LOC100182620	ENSCINP00000031444	ENSCINP00000036504	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.811
H2XZE6_CIOIN	F6QNB6_CIOIN	ENSCINP00000035030	ENSCINP00000009733	HIT-type domain-containing protein.	Uncharacterized protein.	0.447
H2XZE6_CIOIN	F6RIF9_CIOIN	ENSCINP00000035030	ENSCINP00000013483	HIT-type domain-containing protein.	HIT-type domain-containing protein.	0.811
H2XZE6_CIOIN	H2XL08_CIOIN	ENSCINP00000035030	ENSCINP00000030340	HIT-type domain-containing protein.	HIT-type domain-containing protein.	0.480
H2XZE6_CIOIN	LOC100182620	ENSCINP00000035030	ENSCINP00000036504	HIT-type domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.407
H2XZE6_CIOIN	Zf(c2h2)-101	ENSCINP00000035030	ENSCINP00000025436	HIT-type domain-containing protein.	C2H2-type domain-containing protein.	0.447
LOC100177411	F6RIF9_CIOIN	ENSCINP00000009659	ENSCINP00000013483	RuvB-like helicase; Belongs to the RuvB family.	HIT-type domain-containing protein.	0.546
LOC100177411	F6VH72_CIOIN	ENSCINP00000009659	ENSCINP00000016398	RuvB-like helicase; Belongs to the RuvB family.	CS domain-containing protein.	0.600
LOC100177411	LOC100181271	ENSCINP00000009659	ENSCINP00000033326	RuvB-like helicase; Belongs to the RuvB family.	PIH1 domain-containing protein 2.	0.928