(13 nodes) Telomere maintenance via recombination network (Ciona intestinalis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2Y3R0_CIOIN	Uncharacterized protein. (173 aa)
	F7AE79_CIOIN	SP-RING-type domain-containing protein. (239 aa)
	F6RZ99_CIOIN	Zinc-hook domain-containing protein. (477 aa)
	F6RYY5_CIOIN	AAA_23 domain-containing protein. (400 aa)
	LOC100181789	AAA_23 domain-containing protein. (1070 aa)
	F6YY15_CIOIN	ERCC4 domain-containing protein. (826 aa)
	H2XJN2_CIOIN	RECA_2 domain-containing protein. (255 aa)
	H2XL64_CIOIN	SMC_N domain-containing protein. (1036 aa)
	LOC100176337	EKC/KEOPS complex subunit TPRKB; Belongs to the CGI121/TPRKB family. (171 aa)
	H2XNU2_CIOIN	Uncharacterized protein. (214 aa)
	H2XS48_CIOIN	TROVE domain-containing protein. (331 aa)
	LOC100181925	DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents; Belongs to the RecA family. RAD51 subfamily. (328 aa)
	LOC100183893	Uncharacterized protein. (480 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6RYY5_CIOIN	F6RZ99_CIOIN	ENSCINP00000003245	ENSCINP00000003235	AAA_23 domain-containing protein.	Zinc-hook domain-containing protein.	0.900
F6RYY5_CIOIN	H2XJN2_CIOIN	ENSCINP00000003245	ENSCINP00000029864	AAA_23 domain-containing protein.	RECA_2 domain-containing protein.	0.562
F6RYY5_CIOIN	H2XNU2_CIOIN	ENSCINP00000003245	ENSCINP00000031325	AAA_23 domain-containing protein.	Uncharacterized protein.	0.971
F6RYY5_CIOIN	LOC100181925	ENSCINP00000003245	ENSCINP00000033009	AAA_23 domain-containing protein.	DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents; Belongs to the RecA family. RAD51 subfamily.	0.678
F6RYY5_CIOIN	LOC100183893	ENSCINP00000003245	ENSCINP00000036521	AAA_23 domain-containing protein.	Uncharacterized protein.	0.499
F6RZ99_CIOIN	F6RYY5_CIOIN	ENSCINP00000003235	ENSCINP00000003245	Zinc-hook domain-containing protein.	AAA_23 domain-containing protein.	0.900
F6RZ99_CIOIN	H2XJN2_CIOIN	ENSCINP00000003235	ENSCINP00000029864	Zinc-hook domain-containing protein.	RECA_2 domain-containing protein.	0.562
F6RZ99_CIOIN	H2XNU2_CIOIN	ENSCINP00000003235	ENSCINP00000031325	Zinc-hook domain-containing protein.	Uncharacterized protein.	0.900
F6RZ99_CIOIN	LOC100181925	ENSCINP00000003235	ENSCINP00000033009	Zinc-hook domain-containing protein.	DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents; Belongs to the RecA family. RAD51 subfamily.	0.678
F6RZ99_CIOIN	LOC100183893	ENSCINP00000003235	ENSCINP00000036521	Zinc-hook domain-containing protein.	Uncharacterized protein.	0.499
F6YY15_CIOIN	H2XJN2_CIOIN	ENSCINP00000024251	ENSCINP00000029864	ERCC4 domain-containing protein.	RECA_2 domain-containing protein.	0.668
F6YY15_CIOIN	LOC100181925	ENSCINP00000024251	ENSCINP00000033009	ERCC4 domain-containing protein.	DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents; Belongs to the RecA family. RAD51 subfamily.	0.608
F7AE79_CIOIN	H2XL64_CIOIN	ENSCINP00000002446	ENSCINP00000030396	SP-RING-type domain-containing protein.	SMC_N domain-containing protein.	0.999
F7AE79_CIOIN	LOC100181789	ENSCINP00000002446	ENSCINP00000016652	SP-RING-type domain-containing protein.	AAA_23 domain-containing protein.	0.999
F7AE79_CIOIN	LOC100181925	ENSCINP00000002446	ENSCINP00000033009	SP-RING-type domain-containing protein.	DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents; Belongs to the RecA family. RAD51 subfamily.	0.609
H2XJN2_CIOIN	F6RYY5_CIOIN	ENSCINP00000029864	ENSCINP00000003245	RECA_2 domain-containing protein.	AAA_23 domain-containing protein.	0.562
H2XJN2_CIOIN	F6RZ99_CIOIN	ENSCINP00000029864	ENSCINP00000003235	RECA_2 domain-containing protein.	Zinc-hook domain-containing protein.	0.562
H2XJN2_CIOIN	F6YY15_CIOIN	ENSCINP00000029864	ENSCINP00000024251	RECA_2 domain-containing protein.	ERCC4 domain-containing protein.	0.668
H2XJN2_CIOIN	H2XNU2_CIOIN	ENSCINP00000029864	ENSCINP00000031325	RECA_2 domain-containing protein.	Uncharacterized protein.	0.562
H2XJN2_CIOIN	LOC100181925	ENSCINP00000029864	ENSCINP00000033009	RECA_2 domain-containing protein.	DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents; Belongs to the RecA family. RAD51 subfamily.	0.982