48 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F7BL59_CIOIN	Exonuclease domain-containing protein. (241 aa)
	H2XRW2_CIOIN	RRM domain-containing protein. (341 aa)
	H2XQK9_CIOIN	Uncharacterized protein. (836 aa)
	H2XPH6_CIOIN	Uncharacterized protein. (504 aa)
	F6SEU1_CIOIN	Pan3_PK domain-containing protein. (387 aa)
	F6WP26_CIOIN	Uncharacterized protein. (292 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (132 aa)
	LOC100184864	BTB domain-containing protein. (464 aa)
	LOC100184512	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (127 aa)
	LOC100184598	Sequestosome-1 isoform X1. (329 aa)
	F7BEA7_CIOIN	Uncharacterized protein. (679 aa)
	F6XIG6_CIOIN	RPOL4c domain-containing protein. (133 aa)
	F6U981_CIOIN	Uncharacterized protein. (374 aa)
	LOC100180168	Protein LSM14 homolog A-B isoform X1. (518 aa)
	rngi	Caprin-1_dimer domain-containing protein. (703 aa)
	F7BBD1_CIOIN	Uncharacterized protein. (2317 aa)
	F6T065_CIOIN	SAM domain-containing protein. (494 aa)
	LOC100182845	Proteasome subunit alpha type-4-like. (91 aa)
	F7B898_CIOIN	Uncharacterized protein; Belongs to the DEAD box helicase family. (435 aa)
	F6YK55_CIOIN	Uncharacterized protein; Belongs to the argonaute family. (862 aa)
	F6UNS0_CIOIN	NOT2_3_5 domain-containing protein. (132 aa)
	LOC100185096	26S proteasome regulatory subunit 7; Belongs to the AAA ATPase family. (433 aa)
	LOC100177468	UPF0692 protein C19orf54 homolog. (286 aa)
	F7BD94_CIOIN	Ge1_WD40 domain-containing protein. (1352 aa)
	F6RUQ3_CIOIN	Proteasome subunit alpha type. (251 aa)
	LOC100177778	DNA-directed RNA polymerase II subunit RPB7. (172 aa)
	F6WQE3_CIOIN	Uncharacterized protein. (310 aa)
	F6UGN5_CIOIN	Uncharacterized protein. (296 aa)
	F6YGK4_CIOIN	Uncharacterized protein. (591 aa)
	F7BQ44_CIOIN	YTH domain-containing protein. (572 aa)
	F7A4T6_CIOIN	RNB domain-containing protein. (741 aa)
	LOC100180825	RING-type domain-containing protein. (215 aa)
	F6RCY1_CIOIN	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (504 aa)
	cnot7/8	Ci-CNOT7/8 protein. (278 aa)
	F6SXK5_CIOIN	Uncharacterized protein. (504 aa)
	F6W9U8_CIOIN	PB1 domain-containing protein. (224 aa)
	F6ZZH3_CIOIN	Uncharacterized protein. (692 aa)
	H2Y2H8_CIOIN	Uncharacterized protein. (258 aa)
	H2Y1J5_CIOIN	Uncharacterized protein. (448 aa)
	H2XXZ2_CIOIN	XRN1_D2_D3 domain-containing protein. (149 aa)
	H2XX77_CIOIN	CSP domain-containing protein. (143 aa)
	H2XWR8_CIOIN	Nudix hydrolase domain-containing protein. (235 aa)
	H2XWA5_CIOIN	Uncharacterized protein. (188 aa)
	LOC100175581	Uncharacterized protein LOC100175581. (186 aa)
	LOC100179585	Proteasome subunit alpha type. (233 aa)
	H2XSZ1_CIOIN	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	H2XSE6_CIOIN	PAT1 domain-containing protein. (580 aa)
	LOC100181225	U6 snRNA-associated Sm-like protein LSm6. (82 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6RCY1_CIOIN	H2XSZ1_CIOIN	ENSCINP00000006314	ENSCINP00000032775	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...]	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.534
F6RUQ3_CIOIN	LOC100179585	ENSCINP00000010909	ENSCINP00000033277	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
F6RUQ3_CIOIN	LOC100182845	ENSCINP00000010909	ENSCINP00000016747	Proteasome subunit alpha type.	Proteasome subunit alpha type-4-like.	0.999
F6RUQ3_CIOIN	LOC100185096	ENSCINP00000010909	ENSCINP00000011875	Proteasome subunit alpha type.	26S proteasome regulatory subunit 7; Belongs to the AAA ATPase family.	0.993
F6SEU1_CIOIN	F6SXK5_CIOIN	ENSCINP00000029598	ENSCINP00000002604	Pan3_PK domain-containing protein.	Uncharacterized protein.	0.422
F6SEU1_CIOIN	F7B898_CIOIN	ENSCINP00000029598	ENSCINP00000015240	Pan3_PK domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.445
F6SEU1_CIOIN	F7BBD1_CIOIN	ENSCINP00000029598	ENSCINP00000018578	Pan3_PK domain-containing protein.	Uncharacterized protein.	0.407
F6SEU1_CIOIN	F7BL59_CIOIN	ENSCINP00000029598	ENSCINP00000000762	Pan3_PK domain-containing protein.	Exonuclease domain-containing protein.	0.977
F6SEU1_CIOIN	H2XRW2_CIOIN	ENSCINP00000029598	ENSCINP00000032396	Pan3_PK domain-containing protein.	RRM domain-containing protein.	0.644
F6SEU1_CIOIN	H2XXZ2_CIOIN	ENSCINP00000029598	ENSCINP00000034526	Pan3_PK domain-containing protein.	XRN1_D2_D3 domain-containing protein.	0.422
F6SEU1_CIOIN	H2Y2H8_CIOIN	ENSCINP00000029598	ENSCINP00000036113	Pan3_PK domain-containing protein.	Uncharacterized protein.	0.971
F6SEU1_CIOIN	cnot7/8	ENSCINP00000029598	ENSCINP00000006096	Pan3_PK domain-containing protein.	Ci-CNOT7/8 protein.	0.569
F6SXK5_CIOIN	F6SEU1_CIOIN	ENSCINP00000002604	ENSCINP00000029598	Uncharacterized protein.	Pan3_PK domain-containing protein.	0.422
F6SXK5_CIOIN	F6WP26_CIOIN	ENSCINP00000002604	ENSCINP00000025899	Uncharacterized protein.	Uncharacterized protein.	0.932
F6SXK5_CIOIN	F6WQE3_CIOIN	ENSCINP00000002604	ENSCINP00000009461	Uncharacterized protein.	Uncharacterized protein.	0.512
F6SXK5_CIOIN	F6YK55_CIOIN	ENSCINP00000002604	ENSCINP00000015042	Uncharacterized protein.	Uncharacterized protein; Belongs to the argonaute family.	0.456
F6SXK5_CIOIN	F7A4T6_CIOIN	ENSCINP00000002604	ENSCINP00000008123	Uncharacterized protein.	RNB domain-containing protein.	0.633
F6SXK5_CIOIN	F7B898_CIOIN	ENSCINP00000002604	ENSCINP00000015240	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.534
F6SXK5_CIOIN	F7BBD1_CIOIN	ENSCINP00000002604	ENSCINP00000018578	Uncharacterized protein.	Uncharacterized protein.	0.456
F6SXK5_CIOIN	F7BD94_CIOIN	ENSCINP00000002604	ENSCINP00000011365	Uncharacterized protein.	Ge1_WD40 domain-containing protein.	0.696