(9 nodes) RNA polymerase III type 3 promoter sequence-specific DNA binding network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6VK85_CIOIN	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (754 aa)
	LOC100176030	WD_REPEATS_REGION domain-containing protein. (1206 aa)
	H2Y066_CIOIN	Uncharacterized protein. (361 aa)
	H2XWT8_CIOIN	Uncharacterized protein. (206 aa)
	H2XVU3_CIOIN	Uncharacterized protein. (328 aa)
	H2XM17_CIOIN	FAT domain-containing protein. (187 aa)
	F6YS50_CIOIN	Uncharacterized protein. (311 aa)
	F7B658_CIOIN	TFIIB-type domain-containing protein. (658 aa)
	F6PPJ7_CIOIN	Uncharacterized protein. (205 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PPJ7_CIOIN	F6VK85_CIOIN	ENSCINP00000006221	ENSCINP00000002868	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.428
F6PPJ7_CIOIN	F7B658_CIOIN	ENSCINP00000006221	ENSCINP00000008641	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.653
F6PPJ7_CIOIN	H2XM17_CIOIN	ENSCINP00000006221	ENSCINP00000030699	Uncharacterized protein.	FAT domain-containing protein.	0.428
F6PPJ7_CIOIN	H2XWT8_CIOIN	ENSCINP00000006221	ENSCINP00000034122	Uncharacterized protein.	Uncharacterized protein.	0.428
F6PPJ7_CIOIN	H2Y066_CIOIN	ENSCINP00000006221	ENSCINP00000035300	Uncharacterized protein.	Uncharacterized protein.	0.428
F6PPJ7_CIOIN	LOC100176030	ENSCINP00000006221	ENSCINP00000001261	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.639
F6VK85_CIOIN	F6PPJ7_CIOIN	ENSCINP00000002868	ENSCINP00000006221	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.428
F6VK85_CIOIN	H2XM17_CIOIN	ENSCINP00000002868	ENSCINP00000030699	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	FAT domain-containing protein.	0.943
F6VK85_CIOIN	H2XWT8_CIOIN	ENSCINP00000002868	ENSCINP00000034122	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.925
F6VK85_CIOIN	H2Y066_CIOIN	ENSCINP00000002868	ENSCINP00000035300	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.929
F6VK85_CIOIN	LOC100176030	ENSCINP00000002868	ENSCINP00000001261	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	WD_REPEATS_REGION domain-containing protein.	0.915
F6YS50_CIOIN	F7B658_CIOIN	ENSCINP00000026721	ENSCINP00000008641	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.508
F6YS50_CIOIN	H2XVU3_CIOIN	ENSCINP00000026721	ENSCINP00000033777	Uncharacterized protein.	Uncharacterized protein.	0.995
F7B658_CIOIN	F6PPJ7_CIOIN	ENSCINP00000008641	ENSCINP00000006221	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.653
F7B658_CIOIN	F6YS50_CIOIN	ENSCINP00000008641	ENSCINP00000026721	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.508
F7B658_CIOIN	H2XVU3_CIOIN	ENSCINP00000008641	ENSCINP00000033777	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.479
H2XM17_CIOIN	F6PPJ7_CIOIN	ENSCINP00000030699	ENSCINP00000006221	FAT domain-containing protein.	Uncharacterized protein.	0.428
H2XM17_CIOIN	F6VK85_CIOIN	ENSCINP00000030699	ENSCINP00000002868	FAT domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.943
H2XM17_CIOIN	H2XWT8_CIOIN	ENSCINP00000030699	ENSCINP00000034122	FAT domain-containing protein.	Uncharacterized protein.	0.920
H2XM17_CIOIN	H2Y066_CIOIN	ENSCINP00000030699	ENSCINP00000035300	FAT domain-containing protein.	Uncharacterized protein.	0.964