4 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100177411	RuvB-like helicase; Belongs to the RuvB family. (467 aa)
	F6U609_CIOIN	Nop domain-containing protein. (533 aa)
	F6RIF9_CIOIN	HIT-type domain-containing protein. (122 aa)
	F6YY15_CIOIN	ERCC4 domain-containing protein. (826 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6RIF9_CIOIN	F6U609_CIOIN	ENSCINP00000013483	ENSCINP00000011290	HIT-type domain-containing protein.	Nop domain-containing protein.	0.705
F6RIF9_CIOIN	LOC100177411	ENSCINP00000013483	ENSCINP00000009659	HIT-type domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.546
F6U609_CIOIN	F6RIF9_CIOIN	ENSCINP00000011290	ENSCINP00000013483	Nop domain-containing protein.	HIT-type domain-containing protein.	0.705
F6U609_CIOIN	LOC100177411	ENSCINP00000011290	ENSCINP00000009659	Nop domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.939
LOC100177411	F6RIF9_CIOIN	ENSCINP00000009659	ENSCINP00000013483	RuvB-like helicase; Belongs to the RuvB family.	HIT-type domain-containing protein.	0.546
LOC100177411	F6U609_CIOIN	ENSCINP00000009659	ENSCINP00000011290	RuvB-like helicase; Belongs to the RuvB family.	Nop domain-containing protein.	0.939