13 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6WN37_CIOIN	Uncharacterized protein. (114 aa)
	H2XP61_CIOIN	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (236 aa)
	H2XRA6_CIOIN	Uncharacterized protein. (142 aa)
	H2XTN4_CIOIN	PfkB domain-containing protein. (674 aa)
	LOC100180306	Uncharacterized protein. (220 aa)
	LOC100183355	Uncharacterized protein. (496 aa)
	F6U6C0_CIOIN	PseudoU_synth_2 domain-containing protein. (339 aa)
	F6U2M6_CIOIN	PUA domain-containing protein. (528 aa)
	LOC100181113	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (198 aa)
	LOC100184413	TRUD domain-containing protein. (423 aa)
	LOC100181071	TRUD domain-containing protein. (596 aa)
	LOC100179078	tRNA pseudouridine(38/39) synthase. (510 aa)
	F6TLE4_CIOIN	PseudoU_synth_1 domain-containing protein. (371 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6TLE4_CIOIN	F6U2M6_CIOIN	ENSCINP00000019166	ENSCINP00000009502	PseudoU_synth_1 domain-containing protein.	PUA domain-containing protein.	0.863
F6TLE4_CIOIN	F6U6C0_CIOIN	ENSCINP00000019166	ENSCINP00000007760	PseudoU_synth_1 domain-containing protein.	PseudoU_synth_2 domain-containing protein.	0.671
F6TLE4_CIOIN	F6WN37_CIOIN	ENSCINP00000019166	ENSCINP00000018724	PseudoU_synth_1 domain-containing protein.	Uncharacterized protein.	0.754
F6TLE4_CIOIN	H2XRA6_CIOIN	ENSCINP00000019166	ENSCINP00000032190	PseudoU_synth_1 domain-containing protein.	Uncharacterized protein.	0.495
F6TLE4_CIOIN	LOC100179078	ENSCINP00000019166	ENSCINP00000018388	PseudoU_synth_1 domain-containing protein.	tRNA pseudouridine(38/39) synthase.	0.489
F6TLE4_CIOIN	LOC100180306	ENSCINP00000019166	ENSCINP00000036048	PseudoU_synth_1 domain-containing protein.	Uncharacterized protein.	0.495
F6TLE4_CIOIN	LOC100181071	ENSCINP00000019166	ENSCINP00000016750	PseudoU_synth_1 domain-containing protein.	TRUD domain-containing protein.	0.709
F6TLE4_CIOIN	LOC100183355	ENSCINP00000019166	ENSCINP00000001409	PseudoU_synth_1 domain-containing protein.	Uncharacterized protein.	0.541
F6TLE4_CIOIN	LOC100184413	ENSCINP00000019166	ENSCINP00000014933	PseudoU_synth_1 domain-containing protein.	TRUD domain-containing protein.	0.577
F6U2M6_CIOIN	F6TLE4_CIOIN	ENSCINP00000009502	ENSCINP00000019166	PUA domain-containing protein.	PseudoU_synth_1 domain-containing protein.	0.863
F6U2M6_CIOIN	F6U6C0_CIOIN	ENSCINP00000009502	ENSCINP00000007760	PUA domain-containing protein.	PseudoU_synth_2 domain-containing protein.	0.584
F6U2M6_CIOIN	F6WN37_CIOIN	ENSCINP00000009502	ENSCINP00000018724	PUA domain-containing protein.	Uncharacterized protein.	0.473
F6U2M6_CIOIN	H2XP61_CIOIN	ENSCINP00000009502	ENSCINP00000031444	PUA domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.994
F6U2M6_CIOIN	H2XRA6_CIOIN	ENSCINP00000009502	ENSCINP00000032190	PUA domain-containing protein.	Uncharacterized protein.	0.409
F6U2M6_CIOIN	LOC100179078	ENSCINP00000009502	ENSCINP00000018388	PUA domain-containing protein.	tRNA pseudouridine(38/39) synthase.	0.779
F6U2M6_CIOIN	LOC100180306	ENSCINP00000009502	ENSCINP00000036048	PUA domain-containing protein.	Uncharacterized protein.	0.409
F6U2M6_CIOIN	LOC100181071	ENSCINP00000009502	ENSCINP00000016750	PUA domain-containing protein.	TRUD domain-containing protein.	0.699
F6U2M6_CIOIN	LOC100181113	ENSCINP00000009502	ENSCINP00000011858	PUA domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.999
F6U2M6_CIOIN	LOC100183355	ENSCINP00000009502	ENSCINP00000001409	PUA domain-containing protein.	Uncharacterized protein.	0.519
F6U2M6_CIOIN	LOC100184413	ENSCINP00000009502	ENSCINP00000014933	PUA domain-containing protein.	TRUD domain-containing protein.	0.562