(35 nodes) Acrosomal vesicle network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XJY5_CIOIN	SPATA1_C domain-containing protein. (323 aa)
	H2XM57_CIOIN	Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family. (161 aa)
	LOC100178517	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (142 aa)
	H2XNA7_CIOIN	Uncharacterized protein. (205 aa)
	H2XP00_CIOIN	Uncharacterized protein. (3384 aa)
	H2XPY6_CIOIN	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (279 aa)
	H2XS07_CIOIN	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (284 aa)
	H2XSS3_CIOIN	Uncharacterized protein. (95 aa)
	H2XT39_CIOIN	Uncharacterized protein. (494 aa)
	LOC445759	GRIP domain-containing protein. (179 aa)
	H2XXY1_CIOIN	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (305 aa)
	Rab2	Uncharacterized protein. (198 aa)
	LOC100176356	SNARE-associated protein Snapin-like. (133 aa)
	H2Y3A3_CIOIN	Uncharacterized protein. (817 aa)
	F7B073_CIOIN	Uncharacterized protein. (394 aa)
	LOC100177697	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (236 aa)
	F7AIY7_CIOIN	Protein kinase domain-containing protein. (245 aa)
	ci-cmub116	Radial spoke protein CMUB116. (765 aa)
	F6YP95_CIOIN	Guanylate kinase-like domain-containing protein. (720 aa)
	LOC100178357	Intraflagellar transport protein 20 homolog. (132 aa)
	LOC100181205	Protein O-mannosyl-transferase 1-like isoform X1. (664 aa)
	F7A7P7_CIOIN	Enkurin domain-containing protein. (258 aa)
	LOC100183423	Tctex1 domain-containing protein 2 isoform X1. (236 aa)
	F6WR85_CIOIN	Dihydrolipoyl dehydrogenase. (509 aa)
	F6W1I0_CIOIN	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (276 aa)
	F6SP61_CIOIN	Ion_trans domain-containing protein. (414 aa)
	F6V8Z4_CIOIN	Uncharacterized protein. (256 aa)
	F6UHL0_CIOIN	Uncharacterized protein. (165 aa)
	LOC100186797	GLIPR1-like protein 1; Belongs to the CRISP family. (409 aa)
	F6U667_CIOIN	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (306 aa)
	F6TT48_CIOIN	Uncharacterized protein. (194 aa)
	F6T5L0_CIOIN	Uncharacterized protein. (343 aa)
	F7BKV1_CIOIN	Uncharacterized protein. (838 aa)
	Pf16	Uncharacterized protein. (171 aa)
	F6UMX9_CIOIN	Uncharacterized protein. (425 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6TT48_CIOIN	F7A7P7_CIOIN	ENSCINP00000024091	ENSCINP00000013781	Uncharacterized protein.	Enkurin domain-containing protein.	0.469
F6TT48_CIOIN	H2XT39_CIOIN	ENSCINP00000024091	ENSCINP00000032823	Uncharacterized protein.	Uncharacterized protein.	0.475
F6UMX9_CIOIN	F6YP95_CIOIN	ENSCINP00000025942	ENSCINP00000011422	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.509
F6V8Z4_CIOIN	F6YP95_CIOIN	ENSCINP00000022808	ENSCINP00000011422	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.812
F6YP95_CIOIN	F6UMX9_CIOIN	ENSCINP00000011422	ENSCINP00000025942	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.509
F6YP95_CIOIN	F6V8Z4_CIOIN	ENSCINP00000011422	ENSCINP00000022808	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.812
F6YP95_CIOIN	F7B073_CIOIN	ENSCINP00000011422	ENSCINP00000017997	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.598
F6YP95_CIOIN	F7BKV1_CIOIN	ENSCINP00000011422	ENSCINP00000024719	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.598
F6YP95_CIOIN	H2XNA7_CIOIN	ENSCINP00000011422	ENSCINP00000031140	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.598
F6YP95_CIOIN	Pf16	ENSCINP00000011422	ENSCINP00000025941	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.509
F7A7P7_CIOIN	F6TT48_CIOIN	ENSCINP00000013781	ENSCINP00000024091	Enkurin domain-containing protein.	Uncharacterized protein.	0.469
F7A7P7_CIOIN	H2XT39_CIOIN	ENSCINP00000013781	ENSCINP00000032823	Enkurin domain-containing protein.	Uncharacterized protein.	0.481
F7B073_CIOIN	F6YP95_CIOIN	ENSCINP00000017997	ENSCINP00000011422	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.598
F7B073_CIOIN	F7BKV1_CIOIN	ENSCINP00000017997	ENSCINP00000024719	Uncharacterized protein.	Uncharacterized protein.	0.932
F7B073_CIOIN	H2XNA7_CIOIN	ENSCINP00000017997	ENSCINP00000031140	Uncharacterized protein.	Uncharacterized protein.	0.626
F7B073_CIOIN	H2XT39_CIOIN	ENSCINP00000017997	ENSCINP00000032823	Uncharacterized protein.	Uncharacterized protein.	0.409
F7BKV1_CIOIN	F6YP95_CIOIN	ENSCINP00000024719	ENSCINP00000011422	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.598
F7BKV1_CIOIN	F7B073_CIOIN	ENSCINP00000024719	ENSCINP00000017997	Uncharacterized protein.	Uncharacterized protein.	0.932
F7BKV1_CIOIN	H2XNA7_CIOIN	ENSCINP00000024719	ENSCINP00000031140	Uncharacterized protein.	Uncharacterized protein.	0.513
F7BKV1_CIOIN	H2XT39_CIOIN	ENSCINP00000024719	ENSCINP00000032823	Uncharacterized protein.	Uncharacterized protein.	0.409