(29 nodes) Neuron migration network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6X4F9_CIOIN	Uncharacterized protein. (262 aa)
	F6WBK6_CIOIN	TPR_REGION domain-containing protein. (446 aa)
	F6YQ38_CIOIN	Uncharacterized protein. (170 aa)
	F6S1D4_CIOIN	Gamma-tubulin complex component. (896 aa)
	F6YEZ2_CIOIN	MAM domain-containing protein. (222 aa)
	F6SFW9_CIOIN	Fork-head domain-containing protein. (470 aa)
	F6YWM5_CIOIN	BHLH domain-containing protein. (96 aa)
	F6YVN3_CIOIN	Uncharacterized protein. (165 aa)
	F6UW73_CIOIN	Uncharacterized protein. (301 aa)
	LOC779004	Transcription factor protein. (553 aa)
	F6YMJ0_CIOIN	MAM domain-containing protein. (289 aa)
	H2XJL8_CIOIN	Uncharacterized protein. (292 aa)
	H2XN97_CIOIN	Uncharacterized protein. (200 aa)
	H2XNX7_CIOIN	PCM1_C domain-containing protein. (324 aa)
	H2XPA3_CIOIN	Ras-GEF domain-containing protein. (451 aa)
	H2XRP4_CIOIN	Uncharacterized protein. (126 aa)
	ekn1	EKN1 protein. (434 aa)
	srf	Transcription factor protein. (335 aa)
	H2XS74_CIOIN	Uncharacterized protein. (301 aa)
	H2XSA6_CIOIN	Uncharacterized protein. (945 aa)
	H2XSG9_CIOIN	EGF-like domain-containing protein. (223 aa)
	H2XT32_CIOIN	Uncharacterized protein. (127 aa)
	H2XUL2_CIOIN	Uncharacterized protein. (299 aa)
	H2XZN8_CIOIN	WD_REPEATS_REGION domain-containing protein. (186 aa)
	H2Y0V6_CIOIN	Uncharacterized protein. (204 aa)
	F6U144_CIOIN	Uncharacterized protein. (789 aa)
	F6URP5_CIOIN	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (2554 aa)
	F6ZZ65_CIOIN	Uncharacterized protein. (582 aa)
	LOC100181289	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily. (292 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SFW9_CIOIN	LOC779004	ENSCINP00000024412	ENSCINP00000027906	Fork-head domain-containing protein.	Transcription factor protein.	0.409
F6SFW9_CIOIN	srf	ENSCINP00000024412	ENSCINP00000032435	Fork-head domain-containing protein.	Transcription factor protein.	0.669
F6U144_CIOIN	ekn1	ENSCINP00000001650	ENSCINP00000032421	Uncharacterized protein.	EKN1 protein.	0.487
F6WBK6_CIOIN	F6ZZ65_CIOIN	ENSCINP00000019082	ENSCINP00000012520	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.982
F6WBK6_CIOIN	H2XNX7_CIOIN	ENSCINP00000019082	ENSCINP00000031360	TPR_REGION domain-containing protein.	PCM1_C domain-containing protein.	0.751
F6X4F9_CIOIN	H2XN97_CIOIN	ENSCINP00000015954	ENSCINP00000031130	Uncharacterized protein.	Uncharacterized protein.	0.413
F6X4F9_CIOIN	H2XPA3_CIOIN	ENSCINP00000015954	ENSCINP00000031486	Uncharacterized protein.	Ras-GEF domain-containing protein.	0.900
F6ZZ65_CIOIN	F6WBK6_CIOIN	ENSCINP00000012520	ENSCINP00000019082	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.982
H2XJL8_CIOIN	LOC100181289	ENSCINP00000029850	ENSCINP00000013734	Uncharacterized protein.	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily.	0.989
H2XN97_CIOIN	F6X4F9_CIOIN	ENSCINP00000031130	ENSCINP00000015954	Uncharacterized protein.	Uncharacterized protein.	0.413
H2XNX7_CIOIN	F6WBK6_CIOIN	ENSCINP00000031360	ENSCINP00000019082	PCM1_C domain-containing protein.	TPR_REGION domain-containing protein.	0.751
H2XPA3_CIOIN	F6X4F9_CIOIN	ENSCINP00000031486	ENSCINP00000015954	Ras-GEF domain-containing protein.	Uncharacterized protein.	0.900
H2XRP4_CIOIN	H2XT32_CIOIN	ENSCINP00000032328	ENSCINP00000032816	Uncharacterized protein.	Uncharacterized protein.	0.535
H2XT32_CIOIN	H2XRP4_CIOIN	ENSCINP00000032816	ENSCINP00000032328	Uncharacterized protein.	Uncharacterized protein.	0.535
H2XT32_CIOIN	H2Y0V6_CIOIN	ENSCINP00000032816	ENSCINP00000035540	Uncharacterized protein.	Uncharacterized protein.	0.528
H2Y0V6_CIOIN	H2XT32_CIOIN	ENSCINP00000035540	ENSCINP00000032816	Uncharacterized protein.	Uncharacterized protein.	0.528
LOC100181289	H2XJL8_CIOIN	ENSCINP00000013734	ENSCINP00000029850	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.989
LOC779004	F6SFW9_CIOIN	ENSCINP00000027906	ENSCINP00000024412	Transcription factor protein.	Fork-head domain-containing protein.	0.409
LOC779004	srf	ENSCINP00000027906	ENSCINP00000032435	Transcription factor protein.	Transcription factor protein.	0.447
ekn1	F6U144_CIOIN	ENSCINP00000032421	ENSCINP00000001650	EKN1 protein.	Uncharacterized protein.	0.487