24 items (Ciona intestinalis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Your Input:
	LOC100176054	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (436 aa)
	F6QR00_CIOIN	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1183 aa)
	LOC100177272	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1814 aa)
	cgrp-rcp	Calcitonin gene-related Peptide receptor component protein. (124 aa)
	F6YSX7_CIOIN	RPOLD domain-containing protein. (345 aa)
	LOC100183393	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1141 aa)
	F6WR46_CIOIN	Uncharacterized protein. (236 aa)
	H2XVZ6_CIOIN	Uncharacterized protein. (436 aa)
	F6ZVG1_CIOIN	Uncharacterized protein; Belongs to the RNA polymerase beta chain family. (275 aa)
	F6SIN5_CIOIN	RNA_pol_Rpb1_5 domain-containing protein. (749 aa)
	H2XR13_CIOIN	RNA_pol_Rpb2_6 domain-containing protein. (135 aa)
	H2XPB0_CIOIN	RPOLA_N domain-containing protein. (207 aa)
	LOC101242260	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (79 aa)
	H2XP40_CIOIN	RNA_pol_Rpb2_1 domain-containing protein. (178 aa)
	LOC100181341	DNA-directed RNA polymerase II subunit RPB11-a isoform X1. (117 aa)
	H2XJG6_CIOIN	Uncharacterized protein. (211 aa)
	H2XZ54_CIOIN	RPOLD domain-containing protein. (286 aa)
	H2Y0J7_CIOIN	RPOLA_N domain-containing protein. (225 aa)
	H2Y3Q0_CIOIN	RPOL_N domain-containing protein. (235 aa)
	H2XVJ2_CIOIN	Uncharacterized protein. (141 aa)
	F6ZVH0_CIOIN	Uncharacterized protein. (205 aa)
	F6V2C0_CIOIN	Uncharacterized protein. (228 aa)
	LOC104266855	DNA-directed RNA polymerase III subunit RPC8-like. (205 aa)
	F6Y5Q3_CIOIN	RPOLD domain-containing protein. (151 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6QR00_CIOIN	F6SIN5_CIOIN	ENSCINP00000013245	ENSCINP00000015772	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA_pol_Rpb1_5 domain-containing protein.	0.837
F6QR00_CIOIN	F6V2C0_CIOIN	ENSCINP00000013245	ENSCINP00000024692	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.819
F6QR00_CIOIN	F6WR46_CIOIN	ENSCINP00000013245	ENSCINP00000004356	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.494
F6QR00_CIOIN	F6Y5Q3_CIOIN	ENSCINP00000013245	ENSCINP00000019931	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.983
F6QR00_CIOIN	F6YSX7_CIOIN	ENSCINP00000013245	ENSCINP00000007337	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.890
F6QR00_CIOIN	H2XJG6_CIOIN	ENSCINP00000013245	ENSCINP00000029798	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
F6QR00_CIOIN	H2XPB0_CIOIN	ENSCINP00000013245	ENSCINP00000031493	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLA_N domain-containing protein.	0.837
F6QR00_CIOIN	H2XVJ2_CIOIN	ENSCINP00000013245	ENSCINP00000033676	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
F6QR00_CIOIN	H2XZ54_CIOIN	ENSCINP00000013245	ENSCINP00000034938	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.983
F6QR00_CIOIN	H2Y0J7_CIOIN	ENSCINP00000013245	ENSCINP00000035431	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLA_N domain-containing protein.	0.837
F6QR00_CIOIN	H2Y3Q0_CIOIN	ENSCINP00000013245	ENSCINP00000036535	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOL_N domain-containing protein.	0.494
F6QR00_CIOIN	LOC100177272	ENSCINP00000013245	ENSCINP00000016166	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
F6QR00_CIOIN	LOC100181341	ENSCINP00000013245	ENSCINP00000030207	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB11-a isoform X1.	0.999
F6QR00_CIOIN	LOC101242260	ENSCINP00000013245	ENSCINP00000032951	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.999
F6QR00_CIOIN	LOC104266855	ENSCINP00000013245	ENSCINP00000023695	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase III subunit RPC8-like.	0.831
F6QR00_CIOIN	cgrp-rcp	ENSCINP00000013245	ENSCINP00000007376	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Calcitonin gene-related Peptide receptor component protein.	0.707
F6SIN5_CIOIN	F6QR00_CIOIN	ENSCINP00000015772	ENSCINP00000013245	RNA_pol_Rpb1_5 domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.837
F6SIN5_CIOIN	F6V2C0_CIOIN	ENSCINP00000015772	ENSCINP00000024692	RNA_pol_Rpb1_5 domain-containing protein.	Uncharacterized protein.	0.956
F6SIN5_CIOIN	F6Y5Q3_CIOIN	ENSCINP00000015772	ENSCINP00000019931	RNA_pol_Rpb1_5 domain-containing protein.	RPOLD domain-containing protein.	0.862
F6SIN5_CIOIN	F6YSX7_CIOIN	ENSCINP00000015772	ENSCINP00000007337	RNA_pol_Rpb1_5 domain-containing protein.	RPOLD domain-containing protein.	0.967