5 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100175786	Ribonucleases P/MRP protein subunit POP1 isoform X1. (985 aa)
	LOC100187385	Mitochondrial ribonuclease P catalytic subunit. (607 aa)
	LOC100182886	Ribonuclease P protein subunit p21. (132 aa)
	H2XRD0_CIOIN	POP4 domain-containing protein. (197 aa)
	LOC100177882	Ribonuclease P protein subunit p30-like. (270 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2XRD0_CIOIN	LOC100175786	ENSCINP00000032214	ENSCINP00000016981	POP4 domain-containing protein.	Ribonucleases P/MRP protein subunit POP1 isoform X1.	0.999
H2XRD0_CIOIN	LOC100177882	ENSCINP00000032214	ENSCINP00000030077	POP4 domain-containing protein.	Ribonuclease P protein subunit p30-like.	0.999
H2XRD0_CIOIN	LOC100182886	ENSCINP00000032214	ENSCINP00000034922	POP4 domain-containing protein.	Ribonuclease P protein subunit p21.	0.999
H2XRD0_CIOIN	LOC100187385	ENSCINP00000032214	ENSCINP00000008753	POP4 domain-containing protein.	Mitochondrial ribonuclease P catalytic subunit.	0.576
LOC100175786	H2XRD0_CIOIN	ENSCINP00000016981	ENSCINP00000032214	Ribonucleases P/MRP protein subunit POP1 isoform X1.	POP4 domain-containing protein.	0.999
LOC100175786	LOC100177882	ENSCINP00000016981	ENSCINP00000030077	Ribonucleases P/MRP protein subunit POP1 isoform X1.	Ribonuclease P protein subunit p30-like.	0.999
LOC100175786	LOC100182886	ENSCINP00000016981	ENSCINP00000034922	Ribonucleases P/MRP protein subunit POP1 isoform X1.	Ribonuclease P protein subunit p21.	0.998
LOC100175786	LOC100187385	ENSCINP00000016981	ENSCINP00000008753	Ribonucleases P/MRP protein subunit POP1 isoform X1.	Mitochondrial ribonuclease P catalytic subunit.	0.701
LOC100177882	H2XRD0_CIOIN	ENSCINP00000030077	ENSCINP00000032214	Ribonuclease P protein subunit p30-like.	POP4 domain-containing protein.	0.999
LOC100177882	LOC100175786	ENSCINP00000030077	ENSCINP00000016981	Ribonuclease P protein subunit p30-like.	Ribonucleases P/MRP protein subunit POP1 isoform X1.	0.999
LOC100177882	LOC100182886	ENSCINP00000030077	ENSCINP00000034922	Ribonuclease P protein subunit p30-like.	Ribonuclease P protein subunit p21.	0.999
LOC100177882	LOC100187385	ENSCINP00000030077	ENSCINP00000008753	Ribonuclease P protein subunit p30-like.	Mitochondrial ribonuclease P catalytic subunit.	0.599
LOC100182886	H2XRD0_CIOIN	ENSCINP00000034922	ENSCINP00000032214	Ribonuclease P protein subunit p21.	POP4 domain-containing protein.	0.999
LOC100182886	LOC100175786	ENSCINP00000034922	ENSCINP00000016981	Ribonuclease P protein subunit p21.	Ribonucleases P/MRP protein subunit POP1 isoform X1.	0.998
LOC100182886	LOC100177882	ENSCINP00000034922	ENSCINP00000030077	Ribonuclease P protein subunit p21.	Ribonuclease P protein subunit p30-like.	0.999
LOC100182886	LOC100187385	ENSCINP00000034922	ENSCINP00000008753	Ribonuclease P protein subunit p21.	Mitochondrial ribonuclease P catalytic subunit.	0.710
LOC100187385	H2XRD0_CIOIN	ENSCINP00000008753	ENSCINP00000032214	Mitochondrial ribonuclease P catalytic subunit.	POP4 domain-containing protein.	0.576
LOC100187385	LOC100175786	ENSCINP00000008753	ENSCINP00000016981	Mitochondrial ribonuclease P catalytic subunit.	Ribonucleases P/MRP protein subunit POP1 isoform X1.	0.701
LOC100187385	LOC100177882	ENSCINP00000008753	ENSCINP00000030077	Mitochondrial ribonuclease P catalytic subunit.	Ribonuclease P protein subunit p30-like.	0.599
LOC100187385	LOC100182886	ENSCINP00000008753	ENSCINP00000034922	Mitochondrial ribonuclease P catalytic subunit.	Ribonuclease P protein subunit p21.	0.710