9 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XPB0_CIOIN	RPOLA_N domain-containing protein. (207 aa)
	LOC100183393	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1141 aa)
	F6YSX7_CIOIN	RPOLD domain-containing protein. (345 aa)
	F6SIN5_CIOIN	RNA_pol_Rpb1_5 domain-containing protein. (749 aa)
	LOC100178283	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	H2Y0J7_CIOIN	RPOLA_N domain-containing protein. (225 aa)
	LOC101242260	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (79 aa)
	H2XJG6_CIOIN	Uncharacterized protein. (211 aa)
	F6V2C0_CIOIN	Uncharacterized protein. (228 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SIN5_CIOIN	F6V2C0_CIOIN	ENSCINP00000015772	ENSCINP00000024692	RNA_pol_Rpb1_5 domain-containing protein.	Uncharacterized protein.	0.956
F6SIN5_CIOIN	F6YSX7_CIOIN	ENSCINP00000015772	ENSCINP00000007337	RNA_pol_Rpb1_5 domain-containing protein.	RPOLD domain-containing protein.	0.967
F6SIN5_CIOIN	H2XJG6_CIOIN	ENSCINP00000015772	ENSCINP00000029798	RNA_pol_Rpb1_5 domain-containing protein.	Uncharacterized protein.	0.951
F6SIN5_CIOIN	H2XPB0_CIOIN	ENSCINP00000015772	ENSCINP00000031493	RNA_pol_Rpb1_5 domain-containing protein.	RPOLA_N domain-containing protein.	0.930
F6SIN5_CIOIN	H2Y0J7_CIOIN	ENSCINP00000015772	ENSCINP00000035431	RNA_pol_Rpb1_5 domain-containing protein.	RPOLA_N domain-containing protein.	0.900
F6SIN5_CIOIN	LOC100178283	ENSCINP00000015772	ENSCINP00000021822	RNA_pol_Rpb1_5 domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.929
F6SIN5_CIOIN	LOC100183393	ENSCINP00000015772	ENSCINP00000006863	RNA_pol_Rpb1_5 domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.989
F6SIN5_CIOIN	LOC101242260	ENSCINP00000015772	ENSCINP00000032951	RNA_pol_Rpb1_5 domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.929
F6V2C0_CIOIN	F6SIN5_CIOIN	ENSCINP00000024692	ENSCINP00000015772	Uncharacterized protein.	RNA_pol_Rpb1_5 domain-containing protein.	0.956
F6V2C0_CIOIN	F6YSX7_CIOIN	ENSCINP00000024692	ENSCINP00000007337	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
F6V2C0_CIOIN	H2XJG6_CIOIN	ENSCINP00000024692	ENSCINP00000029798	Uncharacterized protein.	Uncharacterized protein.	0.999
F6V2C0_CIOIN	H2XPB0_CIOIN	ENSCINP00000024692	ENSCINP00000031493	Uncharacterized protein.	RPOLA_N domain-containing protein.	0.962
F6V2C0_CIOIN	H2Y0J7_CIOIN	ENSCINP00000024692	ENSCINP00000035431	Uncharacterized protein.	RPOLA_N domain-containing protein.	0.979
F6V2C0_CIOIN	LOC100178283	ENSCINP00000024692	ENSCINP00000021822	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.998
F6V2C0_CIOIN	LOC100183393	ENSCINP00000024692	ENSCINP00000006863	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
F6V2C0_CIOIN	LOC101242260	ENSCINP00000024692	ENSCINP00000032951	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.998
F6YSX7_CIOIN	F6SIN5_CIOIN	ENSCINP00000007337	ENSCINP00000015772	RPOLD domain-containing protein.	RNA_pol_Rpb1_5 domain-containing protein.	0.967
F6YSX7_CIOIN	F6V2C0_CIOIN	ENSCINP00000007337	ENSCINP00000024692	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
F6YSX7_CIOIN	H2XJG6_CIOIN	ENSCINP00000007337	ENSCINP00000029798	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
F6YSX7_CIOIN	H2XPB0_CIOIN	ENSCINP00000007337	ENSCINP00000031493	RPOLD domain-containing protein.	RPOLA_N domain-containing protein.	0.973