STRINGSTRING
H2Y0S6_CIOIN H2Y0S6_CIOIN H2Y2G5_CIOIN H2Y2G5_CIOIN H2Y332_CIOIN H2Y332_CIOIN H2Y3S7_CIOIN H2Y3S7_CIOIN LOC100178283 LOC100178283 F6XIG6_CIOIN F6XIG6_CIOIN F6X8I8_CIOIN F6X8I8_CIOIN F6Z277_CIOIN F6Z277_CIOIN F7ATY3_CIOIN F7ATY3_CIOIN LOC100184598 LOC100184598 LOC100177537 LOC100177537 nk4 nk4 F6Y5Q3_CIOIN F6Y5Q3_CIOIN LOC100182343 LOC100182343 F6U8F8_CIOIN F6U8F8_CIOIN LOC100175816 LOC100175816 LOC494392 LOC494392 zf(ring)-55 zf(ring)-55 nf-il2 nf-il2 LOC100177272 LOC100177272 F6THB4_CIOIN F6THB4_CIOIN LOC100183293 LOC100183293 F6SJ61_CIOIN F6SJ61_CIOIN F6SJH8_CIOIN F6SJH8_CIOIN xbpd xbpd F6YK36_CIOIN F6YK36_CIOIN F6YK49_CIOIN F6YK49_CIOIN F6YK62_CIOIN F6YK62_CIOIN F6S7T3_CIOIN F6S7T3_CIOIN F6S7U3_CIOIN F6S7U3_CIOIN F6QR00_CIOIN F6QR00_CIOIN F6PX81_CIOIN F6PX81_CIOIN LOC100179943 LOC100179943 smad4 smad4 LOC100177816 LOC100177816 Hoxa2 Hoxa2 Xbpa Xbpa LOC100177778 LOC100177778 F6QNK0_CIOIN F6QNK0_CIOIN F6RMT1_CIOIN F6RMT1_CIOIN LOC100187321 LOC100187321 F7BP59_CIOIN F7BP59_CIOIN LOC100182348 LOC100182348 Ci-FXR Ci-FXR F6Y8T6_CIOIN F6Y8T6_CIOIN LOC100182742 LOC100182742 zf(c2h2)-55 zf(c2h2)-55 LOC100183139 LOC100183139 F6PL57_CIOIN F6PL57_CIOIN LOC100183594 LOC100183594 e(y)2 e(y)2 F6UE50_CIOIN F6UE50_CIOIN LOC100177214 LOC100177214 Erm/er81 Erm/er81 LOC100185111 LOC100185111 LOC100181502 LOC100181502 F7A363_CIOIN F7A363_CIOIN F6SJW4_CIOIN F6SJW4_CIOIN LOC100179515 LOC100179515 F6X618_CIOIN F6X618_CIOIN F6W9U8_CIOIN F6W9U8_CIOIN F6PH84_CIOIN F6PH84_CIOIN Zf(c2h2)-114 Zf(c2h2)-114 LOC100175005 LOC100175005 F6T377_CIOIN F6T377_CIOIN Xbpc Xbpc F6YWM5_CIOIN F6YWM5_CIOIN Ese Ese LOC100177176 LOC100177176 F6XB76_CIOIN F6XB76_CIOIN F6UMR8_CIOIN F6UMR8_CIOIN F6UMH0_CIOIN F6UMH0_CIOIN F6SY99_CIOIN F6SY99_CIOIN F7BHW5_CIOIN F7BHW5_CIOIN F6S9L7_CIOIN F6S9L7_CIOIN F6YS50_CIOIN F6YS50_CIOIN F6YZE6_CIOIN F6YZE6_CIOIN LOC779004 LOC779004 H2XJG6_CIOIN H2XJG6_CIOIN H2XJT4_CIOIN H2XJT4_CIOIN MED18 MED18 LOC100178802 LOC100178802 LOC100181341 LOC100181341 H2XNC6_CIOIN H2XNC6_CIOIN LOC100182087 LOC100182087 H2XQB7_CIOIN H2XQB7_CIOIN H2XR04_CIOIN H2XR04_CIOIN H2XR93_CIOIN H2XR93_CIOIN srf srf H2XSB0_CIOIN H2XSB0_CIOIN LOC101242260 LOC101242260 H2XTY2_CIOIN H2XTY2_CIOIN H2XU12_CIOIN H2XU12_CIOIN H2XUU5_CIOIN H2XUU5_CIOIN H2XVJ2_CIOIN H2XVJ2_CIOIN LOC100184165 LOC100184165 H2XVU3_CIOIN H2XVU3_CIOIN LOC100186645 LOC100186645 LOC100175581 LOC100175581 H2XW76_CIOIN H2XW76_CIOIN H2XZ54_CIOIN H2XZ54_CIOIN H2Y0R6_CIOIN H2Y0R6_CIOIN H2Y0S5_CIOIN H2Y0S5_CIOIN F6QY65_CIOIN F6QY65_CIOIN
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
H2Y0S6_CIOINUncharacterized protein. (1003 aa)
H2Y2G5_CIOINMediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (160 aa)
H2Y332_CIOINDUF3591 domain-containing protein. (202 aa)
H2Y3S7_CIOINUncharacterized protein. (633 aa)
LOC100178283DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
F6XIG6_CIOINRPOL4c domain-containing protein. (133 aa)
F6X8I8_CIOINBHLH domain-containing protein. (66 aa)
F6Z277_CIOINUncharacterized protein. (210 aa)
F7ATY3_CIOINUncharacterized protein. (121 aa)
LOC100184598Sequestosome-1 isoform X1. (329 aa)
LOC100177537Protein kinase domain-containing protein. (1105 aa)
nk4Transcription factor protein. (623 aa)
F6Y5Q3_CIOINRPOLD domain-containing protein. (151 aa)
LOC100182343Transcription initiation factor IIB-like. (314 aa)
F6U8F8_CIOINTAFH domain-containing protein. (598 aa)
LOC100175816TPR_REGION domain-containing protein. (1034 aa)
LOC494392Uncharacterized protein LOC494392. (131 aa)
zf(ring)-55Zinc finger protein. (323 aa)
nf-il2BZIP domain-containing protein. (585 aa)
LOC100177272DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1814 aa)
F6THB4_CIOINUncharacterized protein. (181 aa)
LOC100183293Transcription elongation factor A protein 1. (298 aa)
F6SJ61_CIOINHTH_44 domain-containing protein. (505 aa)
F6SJH8_CIOINS1 motif domain-containing protein. (450 aa)
xbpdTranscription factor protein isoform X1. (366 aa)
F6YK36_CIOINUncharacterized protein. (563 aa)
F6YK49_CIOINUncharacterized protein. (175 aa)
F6YK62_CIOINCID domain-containing protein. (222 aa)
F6S7T3_CIOINGeneral transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (238 aa)
F6S7U3_CIOINGeneral transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (182 aa)
F6QR00_CIOINDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1183 aa)
F6PX81_CIOINPlus3 domain-containing protein. (336 aa)
LOC100179943General transcription factor IIF subunit 2. (257 aa)
smad4Mothers against decapentaplegic homolog. (527 aa)
LOC100177816cyclin-H; Belongs to the cyclin family. (329 aa)
Hoxa2Homeobox domain-containing protein. (349 aa)
XbpaBZIP domain-containing protein. (309 aa)
LOC100177778DNA-directed RNA polymerase II subunit RPB7. (172 aa)
F6QNK0_CIOINTAF domain-containing protein. (263 aa)
F6RMT1_CIOINUncharacterized protein. (551 aa)
LOC100187321RNA polymerase II subunit A C-terminal domain phosphatase SSU72. (192 aa)
F7BP59_CIOINUncharacterized protein. (162 aa)
LOC100182348elongin-A3 member D isoform X2. (622 aa)
Ci-FXRNuclear receptor. (294 aa)
F6Y8T6_CIOINTAFII55_N domain-containing protein. (166 aa)
LOC100182742Nucleolar RNA helicase 2. (672 aa)
zf(c2h2)-55Zinc finger protein 55. (858 aa)
LOC100183139Uncharacterized protein. (1035 aa)
F6PL57_CIOINUncharacterized protein. (1087 aa)
LOC100183594General transcription and DNA repair factor IIH helicase subunit XPB. (794 aa)
e(y)2Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (104 aa)
F6UE50_CIOINBTP domain-containing protein. (671 aa)
LOC100177214Uncharacterized protein. (316 aa)
Erm/er81ETS domain-containing protein. (854 aa)
LOC100185111BTP domain-containing protein. (231 aa)
LOC100181502TFIID_20kDa domain-containing protein. (187 aa)
F7A363_CIOINTBP-binding domain-containing protein. (480 aa)
F6SJW4_CIOINUncharacterized protein. (613 aa)
LOC100179515TFIIA-alpha and beta-like factor isoform X1. (332 aa)
F6X618_CIOINTranscription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (515 aa)
F6W9U8_CIOINPB1 domain-containing protein. (224 aa)
F6PH84_CIOINUncharacterized protein. (468 aa)
Zf(c2h2)-114General transcription factor IIH subunit. (395 aa)
LOC100175005HTH TFE/IIEalpha-type domain-containing protein. (343 aa)
F6T377_CIOINUncharacterized protein. (415 aa)
XbpcBZIP domain-containing protein. (437 aa)
F6YWM5_CIOINBHLH domain-containing protein. (96 aa)
EseETS domain-containing protein. (993 aa)
LOC100177176Uncharacterized protein. (181 aa)
F6XB76_CIOINSPT6_acidic domain-containing protein. (206 aa)
F6UMR8_CIOINUncharacterized protein. (477 aa)
F6UMH0_CIOINWW domain-containing protein. (284 aa)
F6SY99_CIOINUncharacterized protein. (329 aa)
F7BHW5_CIOINTranscription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (284 aa)
F6S9L7_CIOINUncharacterized protein. (442 aa)
F6YS50_CIOINUncharacterized protein. (311 aa)
F6YZE6_CIOINUncharacterized protein. (166 aa)
LOC779004Transcription factor protein. (553 aa)
H2XJG6_CIOINUncharacterized protein. (211 aa)
H2XJT4_CIOINPHD-type domain-containing protein. (508 aa)
MED18Mediator of RNA polymerase II transcription subunit 18; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (210 aa)
LOC100178802Transcription elongation factor SPT5. (1047 aa)
LOC100181341DNA-directed RNA polymerase II subunit RPB11-a isoform X1. (117 aa)
H2XNC6_CIOINUncharacterized protein. (219 aa)
LOC100182087WD repeat-containing protein 61-like. (305 aa)
H2XQB7_CIOINPHD-type domain-containing protein. (164 aa)
H2XR04_CIOINCBFD_NFYB_HMF domain-containing protein. (145 aa)
H2XR93_CIOINUncharacterized protein. (189 aa)
srfTranscription factor protein. (335 aa)
H2XSB0_CIOINUncharacterized protein. (578 aa)
LOC101242260DNA-directed RNA polymerases I, II, and III subunit RPABC4. (79 aa)
H2XTY2_CIOINUncharacterized protein. (882 aa)
H2XU12_CIOINUncharacterized protein. (189 aa)
H2XUU5_CIOINUncharacterized protein. (532 aa)
H2XVJ2_CIOINUncharacterized protein. (141 aa)
LOC100184165General transcription factor IIH subunit 3-like. (309 aa)
H2XVU3_CIOINUncharacterized protein. (328 aa)
LOC100186645Uncharacterized protein LOC100186645. (325 aa)
LOC100175581Uncharacterized protein LOC100175581. (186 aa)
H2XW76_CIOINTAF domain-containing protein. (526 aa)
H2XZ54_CIOINRPOLD domain-containing protein. (286 aa)
H2Y0R6_CIOINMediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (227 aa)
H2Y0S5_CIOINRHD_dimer domain-containing protein. (378 aa)
F6QY65_CIOINUncharacterized protein. (216 aa)
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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