24 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2Y332_CIOIN	DUF3591 domain-containing protein. (202 aa)
	H2Y0S6_CIOIN	Uncharacterized protein. (1003 aa)
	H2XW76_CIOIN	TAF domain-containing protein. (526 aa)
	H2XR04_CIOIN	CBFD_NFYB_HMF domain-containing protein. (145 aa)
	H2XQB7_CIOIN	PHD-type domain-containing protein. (164 aa)
	F7BHW5_CIOIN	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (284 aa)
	F6XIG6_CIOIN	RPOL4c domain-containing protein. (133 aa)
	LOC100182343	Transcription initiation factor IIB-like. (314 aa)
	F6U8F8_CIOIN	TAFH domain-containing protein. (598 aa)
	LOC100179943	General transcription factor IIF subunit 2. (257 aa)
	LOC100177816	cyclin-H; Belongs to the cyclin family. (329 aa)
	LOC100177778	DNA-directed RNA polymerase II subunit RPB7. (172 aa)
	F6QNK0_CIOIN	TAF domain-containing protein. (263 aa)
	LOC100182348	elongin-A3 member D isoform X2. (622 aa)
	F6Y8T6_CIOIN	TAFII55_N domain-containing protein. (166 aa)
	LOC100183594	General transcription and DNA repair factor IIH helicase subunit XPB. (794 aa)
	F6UE50_CIOIN	BTP domain-containing protein. (671 aa)
	LOC100185111	BTP domain-containing protein. (231 aa)
	LOC100181502	TFIID_20kDa domain-containing protein. (187 aa)
	F7A363_CIOIN	TBP-binding domain-containing protein. (480 aa)
	F6SJW4_CIOIN	Uncharacterized protein. (613 aa)
	LOC100179515	TFIIA-alpha and beta-like factor isoform X1. (332 aa)
	F6X618_CIOIN	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (515 aa)
	LOC100175005	HTH TFE/IIEalpha-type domain-containing protein. (343 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6QNK0_CIOIN	F6SJW4_CIOIN	ENSCINP00000009720	ENSCINP00000003774	TAF domain-containing protein.	Uncharacterized protein.	0.816
F6QNK0_CIOIN	F6U8F8_CIOIN	ENSCINP00000009720	ENSCINP00000019437	TAF domain-containing protein.	TAFH domain-containing protein.	0.959
F6QNK0_CIOIN	F6UE50_CIOIN	ENSCINP00000009720	ENSCINP00000005505	TAF domain-containing protein.	BTP domain-containing protein.	0.857
F6QNK0_CIOIN	F6X618_CIOIN	ENSCINP00000009720	ENSCINP00000003619	TAF domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.720
F6QNK0_CIOIN	F6XIG6_CIOIN	ENSCINP00000009720	ENSCINP00000021902	TAF domain-containing protein.	RPOL4c domain-containing protein.	0.672
F6QNK0_CIOIN	F6Y8T6_CIOIN	ENSCINP00000009720	ENSCINP00000007361	TAF domain-containing protein.	TAFII55_N domain-containing protein.	0.959
F6QNK0_CIOIN	F7A363_CIOIN	ENSCINP00000009720	ENSCINP00000003814	TAF domain-containing protein.	TBP-binding domain-containing protein.	0.816
F6QNK0_CIOIN	F7BHW5_CIOIN	ENSCINP00000009720	ENSCINP00000026391	TAF domain-containing protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.719
F6QNK0_CIOIN	H2XQB7_CIOIN	ENSCINP00000009720	ENSCINP00000031851	TAF domain-containing protein.	PHD-type domain-containing protein.	0.857
F6QNK0_CIOIN	H2XW76_CIOIN	ENSCINP00000009720	ENSCINP00000033910	TAF domain-containing protein.	TAF domain-containing protein.	0.904
F6QNK0_CIOIN	H2Y0S6_CIOIN	ENSCINP00000009720	ENSCINP00000035510	TAF domain-containing protein.	Uncharacterized protein.	0.959
F6QNK0_CIOIN	H2Y332_CIOIN	ENSCINP00000009720	ENSCINP00000036317	TAF domain-containing protein.	DUF3591 domain-containing protein.	0.816
F6QNK0_CIOIN	LOC100175005	ENSCINP00000009720	ENSCINP00000001141	TAF domain-containing protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.787
F6QNK0_CIOIN	LOC100177778	ENSCINP00000009720	ENSCINP00000010264	TAF domain-containing protein.	DNA-directed RNA polymerase II subunit RPB7.	0.672
F6QNK0_CIOIN	LOC100177816	ENSCINP00000009720	ENSCINP00000010895	TAF domain-containing protein.	cyclin-H; Belongs to the cyclin family.	0.686
F6QNK0_CIOIN	LOC100179515	ENSCINP00000009720	ENSCINP00000003684	TAF domain-containing protein.	TFIIA-alpha and beta-like factor isoform X1.	0.718
F6QNK0_CIOIN	LOC100179943	ENSCINP00000009720	ENSCINP00000012710	TAF domain-containing protein.	General transcription factor IIF subunit 2.	0.718
F6QNK0_CIOIN	LOC100181502	ENSCINP00000009720	ENSCINP00000004058	TAF domain-containing protein.	TFIID_20kDa domain-containing protein.	0.968
F6QNK0_CIOIN	LOC100182343	ENSCINP00000009720	ENSCINP00000019554	TAF domain-containing protein.	Transcription initiation factor IIB-like.	0.797
F6QNK0_CIOIN	LOC100183594	ENSCINP00000009720	ENSCINP00000005835	TAF domain-containing protein.	General transcription and DNA repair factor IIH helicase subunit XPB.	0.674