STRINGSTRING
H2XU12_CIOIN H2XU12_CIOIN H2Y3S7_CIOIN H2Y3S7_CIOIN F6X618_CIOIN F6X618_CIOIN e(y)2 e(y)2 LOC100183139 LOC100183139 LOC100182348 LOC100182348 F6PX81_CIOIN F6PX81_CIOIN H2XUU5_CIOIN H2XUU5_CIOIN F6SJH8_CIOIN F6SJH8_CIOIN F6SJ61_CIOIN F6SJ61_CIOIN LOC100183293 LOC100183293 F6THB4_CIOIN F6THB4_CIOIN LOC494392 LOC494392 LOC100175816 LOC100175816 LOC100177537 LOC100177537 F6XB76_CIOIN F6XB76_CIOIN F6UMR8_CIOIN F6UMR8_CIOIN F6UMH0_CIOIN F6UMH0_CIOIN F6YZE6_CIOIN F6YZE6_CIOIN LOC100178802 LOC100178802 LOC100182087 LOC100182087
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
H2XU12_CIOINUncharacterized protein. (189 aa)
H2Y3S7_CIOINUncharacterized protein. (633 aa)
F6X618_CIOINTranscription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (515 aa)
e(y)2Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (104 aa)
LOC100183139Uncharacterized protein. (1035 aa)
LOC100182348elongin-A3 member D isoform X2. (622 aa)
F6PX81_CIOINPlus3 domain-containing protein. (336 aa)
H2XUU5_CIOINUncharacterized protein. (532 aa)
F6SJH8_CIOINS1 motif domain-containing protein. (450 aa)
F6SJ61_CIOINHTH_44 domain-containing protein. (505 aa)
LOC100183293Transcription elongation factor A protein 1. (298 aa)
F6THB4_CIOINUncharacterized protein. (181 aa)
LOC494392Uncharacterized protein LOC494392. (131 aa)
LOC100175816TPR_REGION domain-containing protein. (1034 aa)
LOC100177537Protein kinase domain-containing protein. (1105 aa)
F6XB76_CIOINSPT6_acidic domain-containing protein. (206 aa)
F6UMR8_CIOINUncharacterized protein. (477 aa)
F6UMH0_CIOINWW domain-containing protein. (284 aa)
F6YZE6_CIOINUncharacterized protein. (166 aa)
LOC100178802Transcription elongation factor SPT5. (1047 aa)
LOC100182087WD repeat-containing protein 61-like. (305 aa)
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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