27 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6R3K6_CIOIN	Uncharacterized protein. (1037 aa)
	H2Y386_CIOIN	Uncharacterized protein. (181 aa)
	H2Y1U3_CIOIN	Protein kinase domain-containing protein. (1156 aa)
	LOC100180055	Uncharacterized protein LOC100180055. (140 aa)
	H2XQL9_CIOIN	PP1c_bdg domain-containing protein. (194 aa)
	H2XKN7_CIOIN	Uncharacterized protein. (116 aa)
	F6X1D6_CIOIN	RWD domain-containing protein. (156 aa)
	F6PNC3_CIOIN	Uncharacterized protein. (1086 aa)
	F6YSG2_CIOIN	RWD domain-containing protein. (260 aa)
	F6TCR0_CIOIN	Protein kinase domain-containing protein. (548 aa)
	F6PQS1_CIOIN	Protein kinase domain-containing protein. (190 aa)
	F6XIG6_CIOIN	RPOL4c domain-containing protein. (133 aa)
	F6QXN6_CIOIN	RRM domain-containing protein. (369 aa)
	F6RAL6_CIOIN	Uncharacterized protein. (147 aa)
	LOC100180800	dnaJ homolog subfamily C member 3. (501 aa)
	F6PKJ4_CIOIN	MIF4G domain-containing protein. (795 aa)
	LOC100176668	Transmembrane emp24 domain-containing protein 2. (203 aa)
	F6Z8I7_CIOIN	Uncharacterized protein. (428 aa)
	F6SVM4_CIOIN	Eukaryotic translation initiation factor 3 subunit K; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (221 aa)
	F6U602_CIOIN	W2 domain-containing protein. (426 aa)
	LOC100177778	DNA-directed RNA polymerase II subunit RPB7. (172 aa)
	LOC100182767	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (700 aa)
	F6PHN1_CIOIN	Protein kinase domain-containing protein. (1026 aa)
	F6TN36_CIOIN	MIF4G domain-containing protein. (228 aa)
	F6WB99_CIOIN	Uncharacterized protein. (401 aa)
	F6V6D5_CIOIN	NTP_transferase domain-containing protein. (267 aa)
	F6V6F4_CIOIN	W2 domain-containing protein. (563 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PHN1_CIOIN	F6TCR0_CIOIN	ENSCINP00000006293	ENSCINP00000025661	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.409
F6PHN1_CIOIN	H2XQL9_CIOIN	ENSCINP00000006293	ENSCINP00000031953	Protein kinase domain-containing protein.	PP1c_bdg domain-containing protein.	0.483
F6PHN1_CIOIN	LOC100180800	ENSCINP00000006293	ENSCINP00000019020	Protein kinase domain-containing protein.	dnaJ homolog subfamily C member 3.	0.532
F6PKJ4_CIOIN	F6PNC3_CIOIN	ENSCINP00000018247	ENSCINP00000028708	MIF4G domain-containing protein.	Uncharacterized protein.	0.505
F6PKJ4_CIOIN	F6QXN6_CIOIN	ENSCINP00000018247	ENSCINP00000020388	MIF4G domain-containing protein.	RRM domain-containing protein.	0.494
F6PKJ4_CIOIN	F6R3K6_CIOIN	ENSCINP00000018247	ENSCINP00000018021	MIF4G domain-containing protein.	Uncharacterized protein.	0.732
F6PKJ4_CIOIN	F6TN36_CIOIN	ENSCINP00000018247	ENSCINP00000005816	MIF4G domain-containing protein.	MIF4G domain-containing protein.	0.474
F6PKJ4_CIOIN	F6WB99_CIOIN	ENSCINP00000018247	ENSCINP00000002206	MIF4G domain-containing protein.	Uncharacterized protein.	0.505
F6PKJ4_CIOIN	H2Y386_CIOIN	ENSCINP00000018247	ENSCINP00000036371	MIF4G domain-containing protein.	Uncharacterized protein.	0.759
F6PKJ4_CIOIN	LOC100182767	ENSCINP00000018247	ENSCINP00000007461	MIF4G domain-containing protein.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.410
F6PNC3_CIOIN	F6PKJ4_CIOIN	ENSCINP00000028708	ENSCINP00000018247	Uncharacterized protein.	MIF4G domain-containing protein.	0.505
F6PNC3_CIOIN	H2Y386_CIOIN	ENSCINP00000028708	ENSCINP00000036371	Uncharacterized protein.	Uncharacterized protein.	0.663
F6QXN6_CIOIN	F6PKJ4_CIOIN	ENSCINP00000020388	ENSCINP00000018247	RRM domain-containing protein.	MIF4G domain-containing protein.	0.494
F6R3K6_CIOIN	F6PKJ4_CIOIN	ENSCINP00000018021	ENSCINP00000018247	Uncharacterized protein.	MIF4G domain-containing protein.	0.732
F6R3K6_CIOIN	F6SVM4_CIOIN	ENSCINP00000018021	ENSCINP00000014937	Uncharacterized protein.	Eukaryotic translation initiation factor 3 subunit K; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.525
F6R3K6_CIOIN	F6U602_CIOIN	ENSCINP00000018021	ENSCINP00000011291	Uncharacterized protein.	W2 domain-containing protein.	0.659
F6R3K6_CIOIN	LOC100182767	ENSCINP00000018021	ENSCINP00000007461	Uncharacterized protein.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.614
F6SVM4_CIOIN	F6R3K6_CIOIN	ENSCINP00000014937	ENSCINP00000018021	Eukaryotic translation initiation factor 3 subunit K; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Uncharacterized protein.	0.525
F6SVM4_CIOIN	F6U602_CIOIN	ENSCINP00000014937	ENSCINP00000011291	Eukaryotic translation initiation factor 3 subunit K; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	W2 domain-containing protein.	0.880
F6SVM4_CIOIN	LOC100182767	ENSCINP00000014937	ENSCINP00000007461	Eukaryotic translation initiation factor 3 subunit K; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.997