35 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100178220	Zinc finger C4H2 domain-containing protein-like. (227 aa)
	F6WFN8_CIOIN	RING-type domain-containing protein. (237 aa)
	F6SEM6_CIOIN	SAGA-associated factor 11 homolog; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. (256 aa)
	F6ZQ14_CIOIN	RING-type domain-containing protein. (232 aa)
	LOC100177184	Ubiquitin-conjugating enzyme E2 W-like. (152 aa)
	F6ZZ26_CIOIN	RING-type domain-containing protein. (269 aa)
	F6R472_CIOIN	CULLIN_2 domain-containing protein; Belongs to the cullin family. (707 aa)
	F6SQE1_CIOIN	Uncharacterized protein. (651 aa)
	F6SQA2_CIOIN	DTC domain-containing protein. (81 aa)
	F6SQ79_CIOIN	RING-type domain-containing protein. (190 aa)
	F6RG85_CIOIN	RING-type domain-containing protein. (248 aa)
	F6PW28_CIOIN	CULLIN_2 domain-containing protein; Belongs to the cullin family. (778 aa)
	F7ANR5_CIOIN	CPSF_A domain-containing protein. (1145 aa)
	LOC100182071	E3 ubiquitin-protein ligase E3D isoform X1. (517 aa)
	LOC494392	Uncharacterized protein LOC494392. (131 aa)
	LOC100175816	TPR_REGION domain-containing protein. (1034 aa)
	F6XKR6_CIOIN	Uncharacterized protein. (180 aa)
	LOC100185382	RING finger protein 219 isoform X1. (618 aa)
	F7A9C9_CIOIN	Uncharacterized protein. (337 aa)
	F6XN27_CIOIN	Uncharacterized protein. (4296 aa)
	F6TZN8_CIOIN	WW domain-containing protein. (437 aa)
	F6ZAH0_CIOIN	Uncharacterized protein. (382 aa)
	zf(ring)-23	RING-type domain-containing protein. (319 aa)
	H2XLG0_CIOIN	RING-type domain-containing protein. (354 aa)
	H2XLZ0_CIOIN	RING-type domain-containing protein. (223 aa)
	H2XM66_CIOIN	E3 ubiquitin protein ligase. (985 aa)
	LOC100182516	RING-box protein 1. (104 aa)
	LOC104265386	Uncharacterized protein. (402 aa)
	H2XUU5_CIOIN	Uncharacterized protein. (532 aa)
	H2XUY6_CIOIN	Cullin_Nedd8 domain-containing protein; Belongs to the cullin family. (145 aa)
	LOC100176962	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
	H2XYD5_CIOIN	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family. (346 aa)
	LOC100175446	Uncharacterized protein. (366 aa)
	LOC104265921	E3 ubiquitin protein ligase. (208 aa)
	H2Y213_CIOIN	Uncharacterized protein. (124 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PW28_CIOIN	F6R472_CIOIN	ENSCINP00000013359	ENSCINP00000006037	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.650
F6PW28_CIOIN	F7ANR5_CIOIN	ENSCINP00000013359	ENSCINP00000015292	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CPSF_A domain-containing protein.	0.659
F6PW28_CIOIN	H2XUY6_CIOIN	ENSCINP00000013359	ENSCINP00000033470	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cullin_Nedd8 domain-containing protein; Belongs to the cullin family.	0.576
F6PW28_CIOIN	LOC100176962	ENSCINP00000013359	ENSCINP00000034116	CULLIN_2 domain-containing protein; Belongs to the cullin family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.723
F6PW28_CIOIN	LOC100182516	ENSCINP00000013359	ENSCINP00000031380	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RING-box protein 1.	0.998
F6PW28_CIOIN	zf(ring)-23	ENSCINP00000013359	ENSCINP00000029036	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RING-type domain-containing protein.	0.416
F6R472_CIOIN	F6PW28_CIOIN	ENSCINP00000006037	ENSCINP00000013359	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.650
F6R472_CIOIN	F7ANR5_CIOIN	ENSCINP00000006037	ENSCINP00000015292	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CPSF_A domain-containing protein.	0.446
F6R472_CIOIN	H2XUY6_CIOIN	ENSCINP00000006037	ENSCINP00000033470	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cullin_Nedd8 domain-containing protein; Belongs to the cullin family.	0.547
F6R472_CIOIN	LOC100176962	ENSCINP00000006037	ENSCINP00000034116	CULLIN_2 domain-containing protein; Belongs to the cullin family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.498
F6R472_CIOIN	LOC100182516	ENSCINP00000006037	ENSCINP00000031380	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RING-box protein 1.	0.969
F6R472_CIOIN	zf(ring)-23	ENSCINP00000006037	ENSCINP00000029036	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RING-type domain-containing protein.	0.577
F6RG85_CIOIN	F6ZZ26_CIOIN	ENSCINP00000009676	ENSCINP00000005674	RING-type domain-containing protein.	RING-type domain-containing protein.	0.594
F6RG85_CIOIN	H2XLG0_CIOIN	ENSCINP00000009676	ENSCINP00000030492	RING-type domain-containing protein.	RING-type domain-containing protein.	0.662
F6RG85_CIOIN	H2XLZ0_CIOIN	ENSCINP00000009676	ENSCINP00000030672	RING-type domain-containing protein.	RING-type domain-containing protein.	0.672
F6TZN8_CIOIN	H2XM66_CIOIN	ENSCINP00000025963	ENSCINP00000030748	WW domain-containing protein.	E3 ubiquitin protein ligase.	0.688
F6TZN8_CIOIN	H2XUU5_CIOIN	ENSCINP00000025963	ENSCINP00000033429	WW domain-containing protein.	Uncharacterized protein.	0.594
F6TZN8_CIOIN	LOC100175816	ENSCINP00000025963	ENSCINP00000018251	WW domain-containing protein.	TPR_REGION domain-containing protein.	0.499
F6TZN8_CIOIN	LOC104265921	ENSCINP00000025963	ENSCINP00000035714	WW domain-containing protein.	E3 ubiquitin protein ligase.	0.655
F6TZN8_CIOIN	LOC494392	ENSCINP00000025963	ENSCINP00000017068	WW domain-containing protein.	Uncharacterized protein LOC494392.	0.905