21 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100185658	Kinetochore protein NDC80 homolog. (596 aa)
	LOC100179977	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (324 aa)
	F6R472_CIOIN	CULLIN_2 domain-containing protein; Belongs to the cullin family. (707 aa)
	F6PPH5_CIOIN	CS domain-containing protein. (243 aa)
	LOC100176174	Uncharacterized protein. (221 aa)
	F6RMU1_CIOIN	Importin N-terminal domain-containing protein. (883 aa)
	LOC100176070	Mitotic spindle assembly checkpoint protein MAD1. (714 aa)
	F6T2X1_CIOIN	Uncharacterized protein; Belongs to the WD repeat SEC13 family. (367 aa)
	LOC100180144	Vacuolar protein sorting-associated protein 4B-like; Belongs to the AAA ATPase family. (438 aa)
	LOC100182501	TPR_REGION domain-containing protein. (560 aa)
	LOC100183428	Uncharacterized protein. (786 aa)
	F7BHD6_CIOIN	FHA domain-containing protein. (474 aa)
	LOC100175291	Uncharacterized protein LOC100175291. (180 aa)
	LOC100182525	Uncharacterized protein. (461 aa)
	F6XCT9_CIOIN	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (256 aa)
	F6VHE0_CIOIN	Uncharacterized protein. (753 aa)
	LOC100184078	CDT1 domain-containing protein. (407 aa)
	H2XUY6_CIOIN	Cullin_Nedd8 domain-containing protein; Belongs to the cullin family. (145 aa)
	LOC100184449	PIN2/TERF1-interacting telomerase inhibitor 1-like. (260 aa)
	H2XWI8_CIOIN	TPR_REGION domain-containing protein. (298 aa)
	H2Y1Y7_CIOIN	ANK_REP_REGION domain-containing protein. (424 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PPH5_CIOIN	F6XCT9_CIOIN	ENSCINP00000006228	ENSCINP00000023720	CS domain-containing protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.640
F6PPH5_CIOIN	LOC100176070	ENSCINP00000006228	ENSCINP00000011710	CS domain-containing protein.	Mitotic spindle assembly checkpoint protein MAD1.	0.638
F6PPH5_CIOIN	LOC100183428	ENSCINP00000006228	ENSCINP00000018123	CS domain-containing protein.	Uncharacterized protein.	0.569
F6PPH5_CIOIN	LOC100185658	ENSCINP00000006228	ENSCINP00000036233	CS domain-containing protein.	Kinetochore protein NDC80 homolog.	0.528
F6R472_CIOIN	H2XUY6_CIOIN	ENSCINP00000006037	ENSCINP00000033470	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cullin_Nedd8 domain-containing protein; Belongs to the cullin family.	0.547
F6XCT9_CIOIN	F6PPH5_CIOIN	ENSCINP00000023720	ENSCINP00000006228	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	CS domain-containing protein.	0.640
F6XCT9_CIOIN	F7BHD6_CIOIN	ENSCINP00000023720	ENSCINP00000019200	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	FHA domain-containing protein.	0.733
F6XCT9_CIOIN	LOC100183428	ENSCINP00000023720	ENSCINP00000018123	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.659
F6XCT9_CIOIN	LOC100185658	ENSCINP00000023720	ENSCINP00000036233	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinetochore protein NDC80 homolog.	0.916
F7BHD6_CIOIN	F6XCT9_CIOIN	ENSCINP00000019200	ENSCINP00000023720	FHA domain-containing protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.733
F7BHD6_CIOIN	LOC100185658	ENSCINP00000019200	ENSCINP00000036233	FHA domain-containing protein.	Kinetochore protein NDC80 homolog.	0.438
H2XUY6_CIOIN	F6R472_CIOIN	ENSCINP00000033470	ENSCINP00000006037	Cullin_Nedd8 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.547
LOC100175291	LOC100176174	ENSCINP00000021680	ENSCINP00000009335	Uncharacterized protein LOC100175291.	Uncharacterized protein.	0.858
LOC100176070	F6PPH5_CIOIN	ENSCINP00000011710	ENSCINP00000006228	Mitotic spindle assembly checkpoint protein MAD1.	CS domain-containing protein.	0.638
LOC100176070	LOC100183428	ENSCINP00000011710	ENSCINP00000018123	Mitotic spindle assembly checkpoint protein MAD1.	Uncharacterized protein.	0.659
LOC100176174	LOC100175291	ENSCINP00000009335	ENSCINP00000021680	Uncharacterized protein.	Uncharacterized protein LOC100175291.	0.858
LOC100176174	LOC100180144	ENSCINP00000009335	ENSCINP00000013451	Uncharacterized protein.	Vacuolar protein sorting-associated protein 4B-like; Belongs to the AAA ATPase family.	0.858
LOC100179977	LOC100184449	ENSCINP00000004450	ENSCINP00000033758	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	PIN2/TERF1-interacting telomerase inhibitor 1-like.	0.695
LOC100180144	LOC100176174	ENSCINP00000013451	ENSCINP00000009335	Vacuolar protein sorting-associated protein 4B-like; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.858
LOC100182501	LOC100184078	ENSCINP00000014260	ENSCINP00000033367	TPR_REGION domain-containing protein.	CDT1 domain-containing protein.	0.571