(30 nodes) Learning network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2Y204_CIOIN	Uncharacterized protein. (246 aa)
	srf	Transcription factor protein. (335 aa)
	H2XS27_CIOIN	Uncharacterized protein. (75 aa)
	H2XT32_CIOIN	Uncharacterized protein. (127 aa)
	H2XWF9_CIOIN	Uncharacterized protein. (488 aa)
	LOC100179843	Uncharacterized protein LOC100179843. (324 aa)
	H2XY78_CIOIN	Uncharacterized protein. (207 aa)
	H2XZD8_CIOIN	Uncharacterized protein. (294 aa)
	H2Y0V6_CIOIN	Uncharacterized protein. (204 aa)
	H2Y1U3_CIOIN	Protein kinase domain-containing protein. (1156 aa)
	F6ZGD0_CIOIN	SAM domain-containing protein. (261 aa)
	F7AMQ2_CIOIN	TPR_REGION domain-containing protein. (186 aa)
	LOC100187335	Cystinosin. (399 aa)
	F6PN33_CIOIN	Tyrosine-protein kinase. (390 aa)
	F6TBE2_CIOIN	Uncharacterized protein. (444 aa)
	F6TLB6_CIOIN	Uncharacterized protein. (891 aa)
	LOC100187265	Uncharacterized protein. (949 aa)
	H2Y2K4_CIOIN	3-hydroxy-3-methylglutaryl coenzyme A reductase. (807 aa)
	LOC100181289	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily. (292 aa)
	F6XVY9_CIOIN	HECT domain-containing protein. (862 aa)
	F6VWV5_CIOIN	HMG box domain-containing protein. (389 aa)
	F7BJQ5_CIOIN	ANK_REP_REGION domain-containing protein. (133 aa)
	F6PQS1_CIOIN	Protein kinase domain-containing protein. (190 aa)
	Htt	Uncharacterized protein. (639 aa)
	LOC100187429	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (160 aa)
	F6W3W9_CIOIN	Uncharacterized protein. (758 aa)
	F6X1D6_CIOIN	RWD domain-containing protein. (156 aa)
	F6T2G1_CIOIN	Uncharacterized protein. (298 aa)
	H2XRL8_CIOIN	Uncharacterized protein. (854 aa)
	H2XRP4_CIOIN	Uncharacterized protein. (126 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6T2G1_CIOIN	F6TLB6_CIOIN	ENSCINP00000029547	ENSCINP00000007196	Uncharacterized protein.	Uncharacterized protein.	0.950
F6T2G1_CIOIN	F6W3W9_CIOIN	ENSCINP00000029547	ENSCINP00000028344	Uncharacterized protein.	Uncharacterized protein.	0.946
F6TLB6_CIOIN	F6T2G1_CIOIN	ENSCINP00000007196	ENSCINP00000029547	Uncharacterized protein.	Uncharacterized protein.	0.950
F6TLB6_CIOIN	F6W3W9_CIOIN	ENSCINP00000007196	ENSCINP00000028344	Uncharacterized protein.	Uncharacterized protein.	0.949
F6W3W9_CIOIN	F6T2G1_CIOIN	ENSCINP00000028344	ENSCINP00000029547	Uncharacterized protein.	Uncharacterized protein.	0.946
F6W3W9_CIOIN	F6TLB6_CIOIN	ENSCINP00000028344	ENSCINP00000007196	Uncharacterized protein.	Uncharacterized protein.	0.949
F6X1D6_CIOIN	H2Y1U3_CIOIN	ENSCINP00000029439	ENSCINP00000035877	RWD domain-containing protein.	Protein kinase domain-containing protein.	0.899
H2XRP4_CIOIN	H2XT32_CIOIN	ENSCINP00000032328	ENSCINP00000032816	Uncharacterized protein.	Uncharacterized protein.	0.535
H2XT32_CIOIN	H2XRP4_CIOIN	ENSCINP00000032816	ENSCINP00000032328	Uncharacterized protein.	Uncharacterized protein.	0.535
H2XT32_CIOIN	H2Y0V6_CIOIN	ENSCINP00000032816	ENSCINP00000035540	Uncharacterized protein.	Uncharacterized protein.	0.528
H2XY78_CIOIN	H2Y204_CIOIN	ENSCINP00000034612	ENSCINP00000035939	Uncharacterized protein.	Uncharacterized protein.	0.529
H2XY78_CIOIN	Htt	ENSCINP00000034612	ENSCINP00000027572	Uncharacterized protein.	Uncharacterized protein.	0.657
H2Y0V6_CIOIN	H2XT32_CIOIN	ENSCINP00000035540	ENSCINP00000032816	Uncharacterized protein.	Uncharacterized protein.	0.528
H2Y1U3_CIOIN	F6X1D6_CIOIN	ENSCINP00000035877	ENSCINP00000029439	Protein kinase domain-containing protein.	RWD domain-containing protein.	0.899
H2Y204_CIOIN	H2XY78_CIOIN	ENSCINP00000035939	ENSCINP00000034612	Uncharacterized protein.	Uncharacterized protein.	0.529
H2Y204_CIOIN	Htt	ENSCINP00000035939	ENSCINP00000027572	Uncharacterized protein.	Uncharacterized protein.	0.931
Htt	H2XY78_CIOIN	ENSCINP00000027572	ENSCINP00000034612	Uncharacterized protein.	Uncharacterized protein.	0.657
Htt	H2Y204_CIOIN	ENSCINP00000027572	ENSCINP00000035939	Uncharacterized protein.	Uncharacterized protein.	0.931
Htt	LOC100181289	ENSCINP00000027572	ENSCINP00000013734	Uncharacterized protein.	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily.	0.554
LOC100181289	Htt	ENSCINP00000013734	ENSCINP00000027572	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.554