33 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100177537	Protein kinase domain-containing protein. (1105 aa)
	F6X941_CIOIN	Uncharacterized protein. (296 aa)
	LOC100175816	TPR_REGION domain-containing protein. (1034 aa)
	LOC494392	Uncharacterized protein LOC494392. (131 aa)
	F6SJ61_CIOIN	HTH_44 domain-containing protein. (505 aa)
	LOC100182171	Negative elongation factor E-like. (308 aa)
	F6SKY6_CIOIN	HDAg domain-containing protein. (537 aa)
	SSRP1	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (603 aa)
	F6T377_CIOIN	Uncharacterized protein. (415 aa)
	LOC100182348	elongin-A3 member D isoform X2. (622 aa)
	LOC100186426	Negative elongation factor B. (605 aa)
	LOC100183139	Uncharacterized protein. (1035 aa)
	LOC100183995	Uncharacterized protein. (575 aa)
	F6W461_CIOIN	Uncharacterized protein. (211 aa)
	F6SAD5_CIOIN	Uncharacterized protein; Belongs to the cyclin family. (514 aa)
	F6PX81_CIOIN	Plus3 domain-containing protein. (336 aa)
	F6VS86_CIOIN	AHD domain-containing protein. (660 aa)
	H2XU12_CIOIN	Uncharacterized protein. (189 aa)
	H2XUU5_CIOIN	Uncharacterized protein. (532 aa)
	H2XXZ3_CIOIN	Uncharacterized protein. (870 aa)
	H2Y3S7_CIOIN	Uncharacterized protein. (633 aa)
	LOC100182087	WD repeat-containing protein 61-like. (305 aa)
	F6SJH8_CIOIN	S1 motif domain-containing protein. (450 aa)
	F6W3X7_CIOIN	ANK_REP_REGION domain-containing protein. (509 aa)
	spt4	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (122 aa)
	LOC100178802	Transcription elongation factor SPT5. (1047 aa)
	H2XNY4_CIOIN	EAF domain-containing protein. (241 aa)
	F6QNB6_CIOIN	Uncharacterized protein. (157 aa)
	F6YZE6_CIOIN	Uncharacterized protein. (166 aa)
	F6XB76_CIOIN	SPT6_acidic domain-containing protein. (206 aa)
	Zf(c2h2)-101	C2H2-type domain-containing protein. (212 aa)
	LOC100177815	elongin-C-like; Belongs to the SKP1 family. (114 aa)
	F6V1A9_CIOIN	Uncharacterized protein. (353 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PX81_CIOIN	F6SAD5_CIOIN	ENSCINP00000013055	ENSCINP00000014389	Plus3 domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.687
F6PX81_CIOIN	F6SJ61_CIOIN	ENSCINP00000013055	ENSCINP00000015760	Plus3 domain-containing protein.	HTH_44 domain-containing protein.	0.803
F6PX81_CIOIN	F6SJH8_CIOIN	ENSCINP00000013055	ENSCINP00000015757	Plus3 domain-containing protein.	S1 motif domain-containing protein.	0.803
F6PX81_CIOIN	F6SKY6_CIOIN	ENSCINP00000013055	ENSCINP00000010608	Plus3 domain-containing protein.	HDAg domain-containing protein.	0.593
F6PX81_CIOIN	F6V1A9_CIOIN	ENSCINP00000013055	ENSCINP00000024928	Plus3 domain-containing protein.	Uncharacterized protein.	0.569
F6PX81_CIOIN	F6VS86_CIOIN	ENSCINP00000013055	ENSCINP00000012639	Plus3 domain-containing protein.	AHD domain-containing protein.	0.599
F6PX81_CIOIN	F6X941_CIOIN	ENSCINP00000013055	ENSCINP00000022209	Plus3 domain-containing protein.	Uncharacterized protein.	0.754
F6PX81_CIOIN	F6XB76_CIOIN	ENSCINP00000013055	ENSCINP00000025852	Plus3 domain-containing protein.	SPT6_acidic domain-containing protein.	0.803
F6PX81_CIOIN	F6YZE6_CIOIN	ENSCINP00000013055	ENSCINP00000027885	Plus3 domain-containing protein.	Uncharacterized protein.	0.972
F6PX81_CIOIN	H2XNY4_CIOIN	ENSCINP00000013055	ENSCINP00000031367	Plus3 domain-containing protein.	EAF domain-containing protein.	0.549
F6PX81_CIOIN	H2XU12_CIOIN	ENSCINP00000013055	ENSCINP00000033146	Plus3 domain-containing protein.	Uncharacterized protein.	0.440
F6PX81_CIOIN	H2XUU5_CIOIN	ENSCINP00000013055	ENSCINP00000033429	Plus3 domain-containing protein.	Uncharacterized protein.	0.972
F6PX81_CIOIN	H2Y3S7_CIOIN	ENSCINP00000013055	ENSCINP00000036562	Plus3 domain-containing protein.	Uncharacterized protein.	0.574
F6PX81_CIOIN	LOC100175816	ENSCINP00000013055	ENSCINP00000018251	Plus3 domain-containing protein.	TPR_REGION domain-containing protein.	0.979
F6PX81_CIOIN	LOC100177537	ENSCINP00000013055	ENSCINP00000024069	Plus3 domain-containing protein.	Protein kinase domain-containing protein.	0.694
F6PX81_CIOIN	LOC100177815	ENSCINP00000013055	ENSCINP00000025270	Plus3 domain-containing protein.	elongin-C-like; Belongs to the SKP1 family.	0.570
F6PX81_CIOIN	LOC100178802	ENSCINP00000013055	ENSCINP00000030091	Plus3 domain-containing protein.	Transcription elongation factor SPT5.	0.942
F6PX81_CIOIN	LOC100182087	ENSCINP00000013055	ENSCINP00000031610	Plus3 domain-containing protein.	WD repeat-containing protein 61-like.	0.939
F6PX81_CIOIN	LOC100182171	ENSCINP00000013055	ENSCINP00000011919	Plus3 domain-containing protein.	Negative elongation factor E-like.	0.551
F6PX81_CIOIN	LOC100182348	ENSCINP00000013055	ENSCINP00000008547	Plus3 domain-containing protein.	elongin-A3 member D isoform X2.	0.404