(5 nodes) RNA secondary structure unwinding network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6X3C5_CIOIN	HA2 domain-containing protein. (413 aa)
	F6X3A4_CIOIN	Uncharacterized protein. (594 aa)
	F6YK55_CIOIN	Uncharacterized protein; Belongs to the argonaute family. (862 aa)
	F6WKD5_CIOIN	R3H domain-containing protein. (1049 aa)
	F6W6K0_CIOIN	Uncharacterized protein. (534 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6W6K0_CIOIN	F6X3A4_CIOIN	ENSCINP00000004081	ENSCINP00000015974	Uncharacterized protein.	Uncharacterized protein.	0.608
F6W6K0_CIOIN	F6X3C5_CIOIN	ENSCINP00000004081	ENSCINP00000015971	Uncharacterized protein.	HA2 domain-containing protein.	0.559
F6X3A4_CIOIN	F6W6K0_CIOIN	ENSCINP00000015974	ENSCINP00000004081	Uncharacterized protein.	Uncharacterized protein.	0.608
F6X3A4_CIOIN	F6X3C5_CIOIN	ENSCINP00000015974	ENSCINP00000015971	Uncharacterized protein.	HA2 domain-containing protein.	0.944
F6X3A4_CIOIN	F6YK55_CIOIN	ENSCINP00000015974	ENSCINP00000015042	Uncharacterized protein.	Uncharacterized protein; Belongs to the argonaute family.	0.441
F6X3C5_CIOIN	F6W6K0_CIOIN	ENSCINP00000015971	ENSCINP00000004081	HA2 domain-containing protein.	Uncharacterized protein.	0.559
F6X3C5_CIOIN	F6X3A4_CIOIN	ENSCINP00000015971	ENSCINP00000015974	HA2 domain-containing protein.	Uncharacterized protein.	0.944
F6X3C5_CIOIN	F6YK55_CIOIN	ENSCINP00000015971	ENSCINP00000015042	HA2 domain-containing protein.	Uncharacterized protein; Belongs to the argonaute family.	0.441
F6YK55_CIOIN	F6X3A4_CIOIN	ENSCINP00000015042	ENSCINP00000015974	Uncharacterized protein; Belongs to the argonaute family.	Uncharacterized protein.	0.441
F6YK55_CIOIN	F6X3C5_CIOIN	ENSCINP00000015042	ENSCINP00000015971	Uncharacterized protein; Belongs to the argonaute family.	HA2 domain-containing protein.	0.441