(26 nodes) Regulation of cellular carbohydrate metabolic process network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XYN3_CIOIN	DAGKa domain-containing protein. (184 aa)
	H2XZ46_CIOIN	Uncharacterized protein. (108 aa)
	H2Y066_CIOIN	Uncharacterized protein. (361 aa)
	F6QX80_CIOIN	DAGKc domain-containing protein. (374 aa)
	LOC100187165	Protein phosphatase 1 regulatory subunit 3B-like isoform X3. (390 aa)
	F6Z326_CIOIN	Uncharacterized protein. (589 aa)
	LOC100185848	Deacetylase sirtuin-type domain-containing protein. (357 aa)
	F6YYL7_CIOIN	Ubiquitin-like domain-containing protein. (434 aa)
	F7ANR5_CIOIN	CPSF_A domain-containing protein. (1145 aa)
	L7N0T0_CIOIN	RanBD1 domain-containing protein. (120 aa)
	LOC100181206	TPR_REGION domain-containing protein. (1027 aa)
	foxk	Uncharacterized protein. (614 aa)
	LOC100176674	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (278 aa)
	LOC100186012	PAS domain-containing serine/threonine-protein kinase isoform X2. (1104 aa)
	F7BN93_CIOIN	PfkB domain-containing protein. (311 aa)
	F6YGJ7_CIOIN	Uncharacterized protein; Belongs to the peptidase C19 family. (1099 aa)
	LOC100185085	Protein-serine/threonine kinase. (428 aa)
	F6UJF1_CIOIN	UDENN FLCN/SMCR8-type domain-containing protein. (561 aa)
	F6VK85_CIOIN	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (754 aa)
	Sir2-d	Deacetylase sirtuin-type domain-containing protein. (91 aa)
	LOC100178594	Fructose-2,6-bisphosphatase TIGAR-like. (261 aa)
	F6SLD6_CIOIN	Deacetylase sirtuin-type domain-containing protein. (737 aa)
	H2XM17_CIOIN	FAT domain-containing protein. (187 aa)
	H2XMJ0_CIOIN	CBM21 domain-containing protein. (242 aa)
	H2XWT8_CIOIN	Uncharacterized protein. (206 aa)
	H2XY83_CIOIN	Uncharacterized protein. (445 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6QX80_CIOIN	H2XYN3_CIOIN	ENSCINP00000018087	ENSCINP00000034767	DAGKc domain-containing protein.	DAGKa domain-containing protein.	0.949
F6SLD6_CIOIN	LOC100185848	ENSCINP00000027486	ENSCINP00000023359	Deacetylase sirtuin-type domain-containing protein.	Deacetylase sirtuin-type domain-containing protein.	0.724
F6SLD6_CIOIN	Sir2-d	ENSCINP00000027486	ENSCINP00000002463	Deacetylase sirtuin-type domain-containing protein.	Deacetylase sirtuin-type domain-containing protein.	0.590
F6VK85_CIOIN	F7ANR5_CIOIN	ENSCINP00000002868	ENSCINP00000015292	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	CPSF_A domain-containing protein.	0.514
F6VK85_CIOIN	H2XM17_CIOIN	ENSCINP00000002868	ENSCINP00000030699	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	FAT domain-containing protein.	0.943
F6VK85_CIOIN	H2XWT8_CIOIN	ENSCINP00000002868	ENSCINP00000034122	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.925
F6VK85_CIOIN	H2Y066_CIOIN	ENSCINP00000002868	ENSCINP00000035300	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.929
F6YGJ7_CIOIN	F7ANR5_CIOIN	ENSCINP00000008727	ENSCINP00000015292	Uncharacterized protein; Belongs to the peptidase C19 family.	CPSF_A domain-containing protein.	0.501
F6Z326_CIOIN	F7BN93_CIOIN	ENSCINP00000022455	ENSCINP00000008955	Uncharacterized protein.	PfkB domain-containing protein.	0.410
F7ANR5_CIOIN	F6VK85_CIOIN	ENSCINP00000015292	ENSCINP00000002868	CPSF_A domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.514
F7ANR5_CIOIN	F6YGJ7_CIOIN	ENSCINP00000015292	ENSCINP00000008727	CPSF_A domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.501
F7ANR5_CIOIN	H2XM17_CIOIN	ENSCINP00000015292	ENSCINP00000030699	CPSF_A domain-containing protein.	FAT domain-containing protein.	0.514
F7ANR5_CIOIN	H2XWT8_CIOIN	ENSCINP00000015292	ENSCINP00000034122	CPSF_A domain-containing protein.	Uncharacterized protein.	0.514
F7ANR5_CIOIN	H2Y066_CIOIN	ENSCINP00000015292	ENSCINP00000035300	CPSF_A domain-containing protein.	Uncharacterized protein.	0.514
F7BN93_CIOIN	F6Z326_CIOIN	ENSCINP00000008955	ENSCINP00000022455	PfkB domain-containing protein.	Uncharacterized protein.	0.410
H2XM17_CIOIN	F6VK85_CIOIN	ENSCINP00000030699	ENSCINP00000002868	FAT domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.943
H2XM17_CIOIN	F7ANR5_CIOIN	ENSCINP00000030699	ENSCINP00000015292	FAT domain-containing protein.	CPSF_A domain-containing protein.	0.514
H2XM17_CIOIN	H2XWT8_CIOIN	ENSCINP00000030699	ENSCINP00000034122	FAT domain-containing protein.	Uncharacterized protein.	0.920
H2XM17_CIOIN	H2Y066_CIOIN	ENSCINP00000030699	ENSCINP00000035300	FAT domain-containing protein.	Uncharacterized protein.	0.964
H2XMJ0_CIOIN	LOC100187165	ENSCINP00000030873	ENSCINP00000018358	CBM21 domain-containing protein.	Protein phosphatase 1 regulatory subunit 3B-like isoform X3.	0.609