(16 nodes) Acidic amino acid transport network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100185923	Aamy domain-containing protein. (663 aa)
	F6W3W9_CIOIN	Uncharacterized protein. (758 aa)
	F6T2G1_CIOIN	Uncharacterized protein. (298 aa)
	H2XLM9_CIOIN	PRA1 family protein. (178 aa)
	LOC100180952	Uncharacterized protein. (498 aa)
	F6Y178_CIOIN	Amino acid transporter. (499 aa)
	LOC100183879	Amino acid transporter. (520 aa)
	LOC100185148	Volume-regulated anion channel subunit LRRC8B. (480 aa)
	vgat	Aa_trans domain-containing protein. (637 aa)
	LOC100177154	Aa_trans domain-containing protein. (467 aa)
	vglut	MFS domain-containing protein. (663 aa)
	F6U1B1_CIOIN	Amino acid transporter. (500 aa)
	F6X4B8_CIOIN	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (600 aa)
	F6TLB6_CIOIN	Uncharacterized protein. (891 aa)
	F6TXM9_CIOIN	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (282 aa)
	LOC100186863	PDZ domain-containing protein GIPC1. (316 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6T2G1_CIOIN	F6TLB6_CIOIN	ENSCINP00000029547	ENSCINP00000007196	Uncharacterized protein.	Uncharacterized protein.	0.950
F6T2G1_CIOIN	F6W3W9_CIOIN	ENSCINP00000029547	ENSCINP00000028344	Uncharacterized protein.	Uncharacterized protein.	0.946
F6TLB6_CIOIN	F6T2G1_CIOIN	ENSCINP00000007196	ENSCINP00000029547	Uncharacterized protein.	Uncharacterized protein.	0.950
F6TLB6_CIOIN	F6W3W9_CIOIN	ENSCINP00000007196	ENSCINP00000028344	Uncharacterized protein.	Uncharacterized protein.	0.949
F6U1B1_CIOIN	LOC100185923	ENSCINP00000001643	ENSCINP00000022392	Amino acid transporter.	Aamy domain-containing protein.	0.435
F6U1B1_CIOIN	vgat	ENSCINP00000001643	ENSCINP00000017689	Amino acid transporter.	Aa_trans domain-containing protein.	0.439
F6W3W9_CIOIN	F6T2G1_CIOIN	ENSCINP00000028344	ENSCINP00000029547	Uncharacterized protein.	Uncharacterized protein.	0.946
F6W3W9_CIOIN	F6TLB6_CIOIN	ENSCINP00000028344	ENSCINP00000007196	Uncharacterized protein.	Uncharacterized protein.	0.949
LOC100185923	F6U1B1_CIOIN	ENSCINP00000022392	ENSCINP00000001643	Aamy domain-containing protein.	Amino acid transporter.	0.435
vgat	F6U1B1_CIOIN	ENSCINP00000017689	ENSCINP00000001643	Aa_trans domain-containing protein.	Amino acid transporter.	0.439
vgat	vglut	ENSCINP00000017689	ENSCINP00000018354	Aa_trans domain-containing protein.	MFS domain-containing protein.	0.706
vglut	vgat	ENSCINP00000018354	ENSCINP00000017689	MFS domain-containing protein.	Aa_trans domain-containing protein.	0.706