(17 nodes) rRNA catabolic process network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100183089	Exosome complex component RRP43. (279 aa)
	F6R4R6_CIOIN	HRDC domain-containing protein. (292 aa)
	LOC104265927	Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (384 aa)
	F6SXK5_CIOIN	Uncharacterized protein. (504 aa)
	ENSCINP00000011586	Uncharacterized protein. (235 aa)
	F6TKH9_CIOIN	RNase_PH domain-containing protein. (247 aa)
	LOC100176328-2	Uncharacterized protein LOC100176328 isoform X2. (263 aa)
	F6V2B2_CIOIN	RNase_PH domain-containing protein. (280 aa)
	LOC100182394	Exosome complex component RRP4. (302 aa)
	H2XJM9_CIOIN	Uncharacterized protein. (96 aa)
	LOC100187471	Uncharacterized protein; Belongs to the RNR ribonuclease family. (916 aa)
	Zf(cchc)-22	Uncharacterized protein. (437 aa)
	H2XU65_CIOIN	KH_dom_type_1 domain-containing protein. (241 aa)
	H2XU97_CIOIN	HRDC domain-containing protein. (194 aa)
	H2XXZ2_CIOIN	XRN1_D2_D3 domain-containing protein. (149 aa)
	H2XYT6_CIOIN	3'-5' exonuclease domain-containing protein. (261 aa)
	LOC100184256	Exosome complex component RRP42-like. (290 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCINP00000011586	F6R4R6_CIOIN	ENSCINP00000011586	ENSCINP00000004852	Uncharacterized protein.	HRDC domain-containing protein.	0.948
ENSCINP00000011586	F6SXK5_CIOIN	ENSCINP00000011586	ENSCINP00000002604	Uncharacterized protein.	Uncharacterized protein.	0.714
ENSCINP00000011586	F6TKH9_CIOIN	ENSCINP00000011586	ENSCINP00000019449	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
ENSCINP00000011586	F6V2B2_CIOIN	ENSCINP00000011586	ENSCINP00000024693	Uncharacterized protein.	RNase_PH domain-containing protein.	0.996
ENSCINP00000011586	H2XJM9_CIOIN	ENSCINP00000011586	ENSCINP00000029861	Uncharacterized protein.	Uncharacterized protein.	0.998
ENSCINP00000011586	H2XU65_CIOIN	ENSCINP00000011586	ENSCINP00000033199	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.999
ENSCINP00000011586	H2XU97_CIOIN	ENSCINP00000011586	ENSCINP00000033231	Uncharacterized protein.	HRDC domain-containing protein.	0.948
ENSCINP00000011586	H2XXZ2_CIOIN	ENSCINP00000011586	ENSCINP00000034526	Uncharacterized protein.	XRN1_D2_D3 domain-containing protein.	0.714
ENSCINP00000011586	H2XYT6_CIOIN	ENSCINP00000011586	ENSCINP00000034820	Uncharacterized protein.	3'-5' exonuclease domain-containing protein.	0.948
ENSCINP00000011586	LOC100176328-2	ENSCINP00000011586	ENSCINP00000020050	Uncharacterized protein.	Uncharacterized protein LOC100176328 isoform X2.	0.910
ENSCINP00000011586	LOC100182394	ENSCINP00000011586	ENSCINP00000026787	Uncharacterized protein.	Exosome complex component RRP4.	0.999
ENSCINP00000011586	LOC100183089	ENSCINP00000011586	ENSCINP00000008738	Uncharacterized protein.	Exosome complex component RRP43.	0.999
ENSCINP00000011586	LOC100184256	ENSCINP00000011586	ENSCINP00000009867	Uncharacterized protein.	Exosome complex component RRP42-like.	0.999
ENSCINP00000011586	LOC100187471	ENSCINP00000011586	ENSCINP00000030387	Uncharacterized protein.	Uncharacterized protein; Belongs to the RNR ribonuclease family.	0.970
ENSCINP00000011586	Zf(cchc)-22	ENSCINP00000011586	ENSCINP00000032804	Uncharacterized protein.	Uncharacterized protein.	0.542
F6R4R6_CIOIN	ENSCINP00000011586	ENSCINP00000004852	ENSCINP00000011586	HRDC domain-containing protein.	Uncharacterized protein.	0.948
F6R4R6_CIOIN	F6TKH9_CIOIN	ENSCINP00000004852	ENSCINP00000019449	HRDC domain-containing protein.	RNase_PH domain-containing protein.	0.948
F6R4R6_CIOIN	F6V2B2_CIOIN	ENSCINP00000004852	ENSCINP00000024693	HRDC domain-containing protein.	RNase_PH domain-containing protein.	0.935
F6R4R6_CIOIN	H2XJM9_CIOIN	ENSCINP00000004852	ENSCINP00000029861	HRDC domain-containing protein.	Uncharacterized protein.	0.897
F6R4R6_CIOIN	H2XU65_CIOIN	ENSCINP00000004852	ENSCINP00000033199	HRDC domain-containing protein.	KH_dom_type_1 domain-containing protein.	0.948