(29 nodes) Nuclear matrix network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6WUJ1_CIOIN	Structural maintenance of chromosomes protein. (1175 aa)
	F6XRG3_CIOIN	Prohibitin. (155 aa)
	H2Y3R0_CIOIN	Uncharacterized protein. (173 aa)
	H2XYN3_CIOIN	DAGKa domain-containing protein. (184 aa)
	H2XS48_CIOIN	TROVE domain-containing protein. (331 aa)
	H2XRL5_CIOIN	zf-DNA_Pol domain-containing protein. (143 aa)
	H2XM56_CIOIN	CENP-F_N domain-containing protein. (124 aa)
	LOC100184890-2	Ataxin-1 isoform X2. (151 aa)
	LOC100175237-2	Uncharacterized protein LOC100175237 isoform X1. (301 aa)
	F6RZM2_CIOIN	DNA polymerase. (382 aa)
	LOC104265605	Uncharacterized protein. (575 aa)
	F6ZCL3_CIOIN	Uncharacterized protein. (317 aa)
	F6SQW7_CIOIN	Uncharacterized protein. (328 aa)
	Zf(c2h2)-101	C2H2-type domain-containing protein. (212 aa)
	F6YZ22_CIOIN	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (697 aa)
	F7BDE0_CIOIN	Kin17_mid domain-containing protein. (389 aa)
	Zf(cxxc)-2	CXXC-type domain-containing protein. (410 aa)
	F6TL19_CIOIN	ENDO3c domain-containing protein. (364 aa)
	ckn1	Cockayne syndrome 1 homolog. (403 aa)
	LOC100175966	Glial fibrillary acidic protein; Belongs to the intermediate filament family. (438 aa)
	F6QX80_CIOIN	DAGKc domain-containing protein. (374 aa)
	LOC100183284	SKIP_SNW domain-containing protein. (534 aa)
	F6R4T5_CIOIN	Uncharacterized protein. (815 aa)
	LOC100186524	DDB1- and CUL4-associated factor 7. (343 aa)
	F6T7M7_CIOIN	Uncharacterized protein. (492 aa)
	LOC100184517	Histone acetyltransferase type B catalytic subunit. (408 aa)
	F6RUQ3_CIOIN	Proteasome subunit alpha type. (251 aa)
	F6QNB6_CIOIN	Uncharacterized protein. (157 aa)
	F6RWR9_CIOIN	Uncharacterized protein. (533 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6QX80_CIOIN	H2XYN3_CIOIN	ENSCINP00000018087	ENSCINP00000034767	DAGKc domain-containing protein.	DAGKa domain-containing protein.	0.949
F6RZM2_CIOIN	F6WUJ1_CIOIN	ENSCINP00000003220	ENSCINP00000007668	DNA polymerase.	Structural maintenance of chromosomes protein.	0.406
F6RZM2_CIOIN	H2XRL5_CIOIN	ENSCINP00000003220	ENSCINP00000032299	DNA polymerase.	zf-DNA_Pol domain-containing protein.	0.730
F6WUJ1_CIOIN	F6RZM2_CIOIN	ENSCINP00000007668	ENSCINP00000003220	Structural maintenance of chromosomes protein.	DNA polymerase.	0.406
F6WUJ1_CIOIN	H2XRL5_CIOIN	ENSCINP00000007668	ENSCINP00000032299	Structural maintenance of chromosomes protein.	zf-DNA_Pol domain-containing protein.	0.406
F7BDE0_CIOIN	LOC100183284	ENSCINP00000023335	ENSCINP00000017139	Kin17_mid domain-containing protein.	SKIP_SNW domain-containing protein.	0.482
H2XRL5_CIOIN	F6RZM2_CIOIN	ENSCINP00000032299	ENSCINP00000003220	zf-DNA_Pol domain-containing protein.	DNA polymerase.	0.730
H2XRL5_CIOIN	F6WUJ1_CIOIN	ENSCINP00000032299	ENSCINP00000007668	zf-DNA_Pol domain-containing protein.	Structural maintenance of chromosomes protein.	0.406
H2XS48_CIOIN	LOC100186524	ENSCINP00000032482	ENSCINP00000015872	TROVE domain-containing protein.	DDB1- and CUL4-associated factor 7.	0.401
H2XS48_CIOIN	ckn1	ENSCINP00000032482	ENSCINP00000018875	TROVE domain-containing protein.	Cockayne syndrome 1 homolog.	0.423
H2XYN3_CIOIN	F6QX80_CIOIN	ENSCINP00000034767	ENSCINP00000018087	DAGKa domain-containing protein.	DAGKc domain-containing protein.	0.949
H2Y3R0_CIOIN	LOC100186524	ENSCINP00000036545	ENSCINP00000015872	Uncharacterized protein.	DDB1- and CUL4-associated factor 7.	0.401
H2Y3R0_CIOIN	ckn1	ENSCINP00000036545	ENSCINP00000018875	Uncharacterized protein.	Cockayne syndrome 1 homolog.	0.423
LOC100183284	F7BDE0_CIOIN	ENSCINP00000017139	ENSCINP00000023335	SKIP_SNW domain-containing protein.	Kin17_mid domain-containing protein.	0.482
LOC100186524	H2XS48_CIOIN	ENSCINP00000015872	ENSCINP00000032482	DDB1- and CUL4-associated factor 7.	TROVE domain-containing protein.	0.401
LOC100186524	H2Y3R0_CIOIN	ENSCINP00000015872	ENSCINP00000036545	DDB1- and CUL4-associated factor 7.	Uncharacterized protein.	0.401
LOC100186524	ckn1	ENSCINP00000015872	ENSCINP00000018875	DDB1- and CUL4-associated factor 7.	Cockayne syndrome 1 homolog.	0.800
ckn1	H2XS48_CIOIN	ENSCINP00000018875	ENSCINP00000032482	Cockayne syndrome 1 homolog.	TROVE domain-containing protein.	0.423
ckn1	H2Y3R0_CIOIN	ENSCINP00000018875	ENSCINP00000036545	Cockayne syndrome 1 homolog.	Uncharacterized protein.	0.423
ckn1	LOC100186524	ENSCINP00000018875	ENSCINP00000015872	Cockayne syndrome 1 homolog.	DDB1- and CUL4-associated factor 7.	0.800