(15 nodes) SWI/SNF complex network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6W213_CIOIN	Uncharacterized protein. (572 aa)
	F6Y9A9_CIOIN	Uncharacterized protein. (636 aa)
	F6U886_CIOIN	GLTSCR1 domain-containing protein. (211 aa)
	F6U2A4_CIOIN	BAF250_C domain-containing protein. (629 aa)
	LOC100185398	Actin-like protein 6B; Belongs to the actin family. (423 aa)
	F6VEQ7_CIOIN	RFX-type winged-helix domain-containing protein. (624 aa)
	F6YUQ8_CIOIN	MPN domain-containing protein. (457 aa)
	F6XT34_CIOIN	HMG box domain-containing protein. (405 aa)
	LOC100180348	B-cell CLL/lymphoma 7 protein family member B-like. (167 aa)
	F6PHE6_CIOIN	Uncharacterized protein. (387 aa)
	F6WMT5_CIOIN	HSA domain-containing protein. (374 aa)
	F6UXY9_CIOIN	ARID domain-containing protein. (428 aa)
	H2XVM9_CIOIN	Uncharacterized protein. (639 aa)
	F6UK15_CIOIN	SWIB domain-containing protein. (435 aa)
	F6YSI2_CIOIN	Uncharacterized protein. (250 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PHE6_CIOIN	F6U2A4_CIOIN	ENSCINP00000018285	ENSCINP00000009518	Uncharacterized protein.	BAF250_C domain-containing protein.	0.982
F6PHE6_CIOIN	F6U886_CIOIN	ENSCINP00000018285	ENSCINP00000007469	Uncharacterized protein.	GLTSCR1 domain-containing protein.	0.695
F6PHE6_CIOIN	F6UK15_CIOIN	ENSCINP00000018285	ENSCINP00000003409	Uncharacterized protein.	SWIB domain-containing protein.	0.996
F6PHE6_CIOIN	F6UXY9_CIOIN	ENSCINP00000018285	ENSCINP00000021703	Uncharacterized protein.	ARID domain-containing protein.	0.860
F6PHE6_CIOIN	F6VEQ7_CIOIN	ENSCINP00000018285	ENSCINP00000013909	Uncharacterized protein.	RFX-type winged-helix domain-containing protein.	0.860
F6PHE6_CIOIN	F6W213_CIOIN	ENSCINP00000018285	ENSCINP00000018744	Uncharacterized protein.	Uncharacterized protein.	0.953
F6PHE6_CIOIN	F6WMT5_CIOIN	ENSCINP00000018285	ENSCINP00000018738	Uncharacterized protein.	HSA domain-containing protein.	0.953
F6PHE6_CIOIN	F6XT34_CIOIN	ENSCINP00000018285	ENSCINP00000015936	Uncharacterized protein.	HMG box domain-containing protein.	0.990
F6PHE6_CIOIN	F6Y9A9_CIOIN	ENSCINP00000018285	ENSCINP00000007355	Uncharacterized protein.	Uncharacterized protein.	0.928
F6PHE6_CIOIN	F6YSI2_CIOIN	ENSCINP00000018285	ENSCINP00000007347	Uncharacterized protein.	Uncharacterized protein.	0.928
F6PHE6_CIOIN	H2XVM9_CIOIN	ENSCINP00000018285	ENSCINP00000033713	Uncharacterized protein.	Uncharacterized protein.	0.999
F6PHE6_CIOIN	LOC100180348	ENSCINP00000018285	ENSCINP00000017988	Uncharacterized protein.	B-cell CLL/lymphoma 7 protein family member B-like.	0.593
F6PHE6_CIOIN	LOC100185398	ENSCINP00000018285	ENSCINP00000010732	Uncharacterized protein.	Actin-like protein 6B; Belongs to the actin family.	0.996
F6U2A4_CIOIN	F6PHE6_CIOIN	ENSCINP00000009518	ENSCINP00000018285	BAF250_C domain-containing protein.	Uncharacterized protein.	0.982
F6U2A4_CIOIN	F6U886_CIOIN	ENSCINP00000009518	ENSCINP00000007469	BAF250_C domain-containing protein.	GLTSCR1 domain-containing protein.	0.660
F6U2A4_CIOIN	F6UK15_CIOIN	ENSCINP00000009518	ENSCINP00000003409	BAF250_C domain-containing protein.	SWIB domain-containing protein.	0.948
F6U2A4_CIOIN	F6UXY9_CIOIN	ENSCINP00000009518	ENSCINP00000021703	BAF250_C domain-containing protein.	ARID domain-containing protein.	0.459
F6U2A4_CIOIN	F6VEQ7_CIOIN	ENSCINP00000009518	ENSCINP00000013909	BAF250_C domain-containing protein.	RFX-type winged-helix domain-containing protein.	0.459
F6U2A4_CIOIN	F6W213_CIOIN	ENSCINP00000009518	ENSCINP00000018744	BAF250_C domain-containing protein.	Uncharacterized protein.	0.941
F6U2A4_CIOIN	F6WMT5_CIOIN	ENSCINP00000009518	ENSCINP00000018738	BAF250_C domain-containing protein.	HSA domain-containing protein.	0.941