STRINGSTRING
pias pias cir cir F6QX80_CIOIN F6QX80_CIOIN LOC100175816 LOC100175816 LOC100185848 LOC100185848 F7ATZ1_CIOIN F7ATZ1_CIOIN LOC100179844 LOC100179844 F6ZR14_CIOIN F6ZR14_CIOIN F6XCS0_CIOIN F6XCS0_CIOIN LOC100179352 LOC100179352 F6RMZ6_CIOIN F6RMZ6_CIOIN LOC100177537 LOC100177537 F6ZH30_CIOIN F6ZH30_CIOIN F6YVJ9_CIOIN F6YVJ9_CIOIN F6YBL5_CIOIN F6YBL5_CIOIN F6UBA5_CIOIN F6UBA5_CIOIN F6QG73_CIOIN F6QG73_CIOIN F6RIG9_CIOIN F6RIG9_CIOIN LOC100178376 LOC100178376 F6TDN1_CIOIN F6TDN1_CIOIN F6YUZ1_CIOIN F6YUZ1_CIOIN tcfl1 tcfl1 F6YB82_CIOIN F6YB82_CIOIN F6VNK0_CIOIN F6VNK0_CIOIN F7BHW5_CIOIN F7BHW5_CIOIN F6YRL7_CIOIN F6YRL7_CIOIN LOC100179989 LOC100179989 F7B819_CIOIN F7B819_CIOIN F6XX66_CIOIN F6XX66_CIOIN F6RW32_CIOIN F6RW32_CIOIN LOC100183546 LOC100183546 F6W3V6_CIOIN F6W3V6_CIOIN F6YMT1_CIOIN F6YMT1_CIOIN LOC100180259 LOC100180259 H2XK34_CIOIN H2XK34_CIOIN LOC100183985 LOC100183985 H2XKE2_CIOIN H2XKE2_CIOIN H2XLD4_CIOIN H2XLD4_CIOIN H2XLP4_CIOIN H2XLP4_CIOIN H2XNY4_CIOIN H2XNY4_CIOIN H2XP52_CIOIN H2XP52_CIOIN H2XP93_CIOIN H2XP93_CIOIN H2XPC0_CIOIN H2XPC0_CIOIN H2XPK8_CIOIN H2XPK8_CIOIN H2XPK9_CIOIN H2XPK9_CIOIN H2XPT0_CIOIN H2XPT0_CIOIN LOC100187414 LOC100187414 LOC104266248 LOC104266248 H2XQE4_CIOIN H2XQE4_CIOIN H2XR28_CIOIN H2XR28_CIOIN H2XSB0_CIOIN H2XSB0_CIOIN LOC100186689 LOC100186689 LOC445759 LOC445759 LOC100179235 LOC100179235 H2XVJ9_CIOIN H2XVJ9_CIOIN LOC100184713 LOC100184713 H2XY34_CIOIN H2XY34_CIOIN H2XYN3_CIOIN H2XYN3_CIOIN LOC100186379 LOC100186379 ci-zf(c2h2)-87 ci-zf(c2h2)-87 H2XZG0_CIOIN H2XZG0_CIOIN H2Y1Q5_CIOIN H2Y1Q5_CIOIN zf(cchc)-24 zf(cchc)-24 H2Y226_CIOIN H2Y226_CIOIN LOC100182428 LOC100182428 H2Y2E1_CIOIN H2Y2E1_CIOIN H2Y3Q2_CIOIN H2Y3Q2_CIOIN LOC100176856 LOC100176856 F6SCJ9_CIOIN F6SCJ9_CIOIN LOC100180966 LOC100180966 LOC104265829 LOC104265829 Ci-Net Ci-Net stip stip F6TQ55_CIOIN F6TQ55_CIOIN zf(cchc)-12 zf(cchc)-12 F7AI93_CIOIN F7AI93_CIOIN LOC100183284 LOC100183284 LOC100177981 LOC100177981 F6R4T5_CIOIN F6R4T5_CIOIN F6W282_CIOIN F6W282_CIOIN F6Z6N2_CIOIN F6Z6N2_CIOIN F6WRI9_CIOIN F6WRI9_CIOIN F7AAE8_CIOIN F7AAE8_CIOIN F6XF93_CIOIN F6XF93_CIOIN F6T7M7_CIOIN F6T7M7_CIOIN mox mox SRP54 SRP54 LOC100176319 LOC100176319 F6S7T3_CIOIN F6S7T3_CIOIN F6S7U3_CIOIN F6S7U3_CIOIN F6Y7T8_CIOIN F6Y7T8_CIOIN LOC100186678 LOC100186678 LOC100181403 LOC100181403 F6ZBX8_CIOIN F6ZBX8_CIOIN LOC100178584 LOC100178584 F6TE09_CIOIN F6TE09_CIOIN ciic3 ciic3 LOC100183839 LOC100183839 LOC100177099 LOC100177099 F6RKQ2_CIOIN F6RKQ2_CIOIN Zf(u1like)-1 Zf(u1like)-1 F6Y1N2_CIOIN F6Y1N2_CIOIN F6S6C5_CIOIN F6S6C5_CIOIN F6S6D2_CIOIN F6S6D2_CIOIN F6VII3_CIOIN F6VII3_CIOIN F7BFG7_CIOIN F7BFG7_CIOIN LOC100182155 LOC100182155 LOC100185978 LOC100185978 F7A631_CIOIN F7A631_CIOIN LOC100185146 LOC100185146 F6PM95_CIOIN F6PM95_CIOIN F6PRY2_CIOIN F6PRY2_CIOIN LOC100179233 LOC100179233 LOC100179163 LOC100179163 F7AM07_CIOIN F7AM07_CIOIN F6UHH9_CIOIN F6UHH9_CIOIN Ci-ZF(C3H)-16 Ci-ZF(C3H)-16 F6RWR9_CIOIN F6RWR9_CIOIN F6XGT9_CIOIN F6XGT9_CIOIN Zf(c2h2)-88 Zf(c2h2)-88 F6Z8S6_CIOIN F6Z8S6_CIOIN F6ZUL9_CIOIN F6ZUL9_CIOIN F7ADN1_CIOIN F7ADN1_CIOIN LOC100177805 LOC100177805 LOC100180777 LOC100180777 F6XJG1_CIOIN F6XJG1_CIOIN LOC100175452 LOC100175452 F6ZML6_CIOIN F6ZML6_CIOIN F7A771_CIOIN F7A771_CIOIN zf(matrin)-2 zf(matrin)-2 F6TBF9_CIOIN F6TBF9_CIOIN LOC100184788 LOC100184788 LOC100183592 LOC100183592 ENSCINP00000005756 ENSCINP00000005756 F6WZT7_CIOIN F6WZT7_CIOIN F6XM64_CIOIN F6XM64_CIOIN LOC100184779 LOC100184779 LOC100181928 LOC100181928 LOC104265809 LOC104265809 F6YDG7_CIOIN F6YDG7_CIOIN H2XJF1_CIOIN H2XJF1_CIOIN F6UFC1_CIOIN F6UFC1_CIOIN LOC100179894 LOC100179894 Hif Hif F6W6K0_CIOIN F6W6K0_CIOIN LOC100180093 LOC100180093 F6Z3V6_CIOIN F6Z3V6_CIOIN LOC100182616 LOC100182616 F6WWK0_CIOIN F6WWK0_CIOIN Zf(c2h2)-69 Zf(c2h2)-69 LOC100182715 LOC100182715 Ipf1 Ipf1 F6RKI1_CIOIN F6RKI1_CIOIN F6SGH3_CIOIN F6SGH3_CIOIN F6R6C4_CIOIN F6R6C4_CIOIN F7A5V7_CIOIN F7A5V7_CIOIN LOC100175824 LOC100175824 F6W8G0_CIOIN F6W8G0_CIOIN F6ZTJ9_CIOIN F6ZTJ9_CIOIN F6R442_CIOIN F6R442_CIOIN F6Y5T9_CIOIN F6Y5T9_CIOIN F6YM31_CIOIN F6YM31_CIOIN F6ZDT1_CIOIN F6ZDT1_CIOIN F6TL19_CIOIN F6TL19_CIOIN F7AYX3_CIOIN F7AYX3_CIOIN Zf(cxxc)-2 Zf(cxxc)-2 F6XIG6_CIOIN F6XIG6_CIOIN LOC100179562 LOC100179562 F6X986_CIOIN F6X986_CIOIN
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
piasUncharacterized protein. (687 aa)
cirCi-CIR protein. (242 aa)
F6QX80_CIOINDAGKc domain-containing protein. (374 aa)
LOC100175816TPR_REGION domain-containing protein. (1034 aa)
LOC100185848Deacetylase sirtuin-type domain-containing protein. (357 aa)
F7ATZ1_CIOINProtein kinase domain-containing protein; Belongs to the protein kinase superfamily. (401 aa)
LOC100179844Zinc finger CCCH domain-containing protein 18 isoform X2. (1026 aa)
F6ZR14_CIOINUncharacterized protein. (118 aa)
F6XCS0_CIOINUncharacterized protein. (237 aa)
LOC100179352ATP synthase mitochondrial F1 complex assembly factor 2-like. (272 aa)
F6RMZ6_CIOINUncharacterized protein. (171 aa)
LOC100177537Protein kinase domain-containing protein. (1105 aa)
F6ZH30_CIOINRRM domain-containing protein. (404 aa)
F6YVJ9_CIOINVIR_N domain-containing protein. (202 aa)
F6YBL5_CIOINRRM domain-containing protein. (260 aa)
F6UBA5_CIOINUncharacterized protein. (763 aa)
F6QG73_CIOINUncharacterized protein. (665 aa)
F6RIG9_CIOINUncharacterized protein. (716 aa)
LOC100178376Male-specific lethal 1 homolog isoform X1. (568 aa)
F6TDN1_CIOINF-box domain-containing protein. (583 aa)
F6YUZ1_CIOINUncharacterized protein. (695 aa)
tcfl1Ci-TCFL1 protein. (333 aa)
F6YB82_CIOINUncharacterized protein. (251 aa)
F6VNK0_CIOINFoP_duplication domain-containing protein. (103 aa)
F7BHW5_CIOINTranscription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (284 aa)
F6YRL7_CIOINUncharacterized protein. (199 aa)
LOC100179989PPM-type phosphatase domain-containing protein. (490 aa)
F7B819_CIOINUncharacterized protein. (210 aa)
F6XX66_CIOINUncharacterized protein; Belongs to the cyclin family. (390 aa)
F6RW32_CIOINSAP domain-containing protein. (214 aa)
LOC100183546Dynein assembly factor 1, axonemal homolog. (628 aa)
F6W3V6_CIOINRRM domain-containing protein. (196 aa)
F6YMT1_CIOINUncharacterized protein. (136 aa)
LOC100180259U2 small nuclear ribonucleoprotein A'-like. (252 aa)
H2XK34_CIOINUncharacterized protein. (286 aa)
LOC100183985pre-mRNA-splicing factor 18-like. (348 aa)
H2XKE2_CIOINUncharacterized protein. (2486 aa)
H2XLD4_CIOINWWE domain-containing protein. (154 aa)
H2XLP4_CIOINUncharacterized protein. (455 aa)
H2XNY4_CIOINEAF domain-containing protein. (241 aa)
H2XP52_CIOINUBIQUITIN_CONJUGAT_2 domain-containing protein. (210 aa)
H2XP93_CIOINUncharacterized protein. (379 aa)
H2XPC0_CIOINHelicase ATP-binding domain-containing protein. (175 aa)
H2XPK8_CIOINSprT-like domain-containing protein. (300 aa)
H2XPK9_CIOINUncharacterized protein. (243 aa)
H2XPT0_CIOINUncharacterized protein. (114 aa)
LOC100187414RNA-binding protein 39-like. (465 aa)
LOC104266248Uncharacterized protein. (162 aa)
H2XQE4_CIOINProbable tRNA N6-adenosine threonylcarbamoyltransferase; Component of the EKC/KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity. (340 aa)
H2XR28_CIOINUncharacterized protein. (263 aa)
H2XSB0_CIOINUncharacterized protein. (578 aa)
LOC100186689PWI domain-containing protein. (159 aa)
LOC445759GRIP domain-containing protein. (179 aa)
LOC100179235N_BRCA1_IG domain-containing protein. (241 aa)
H2XVJ9_CIOINHelicase C-terminal domain-containing protein. (209 aa)
LOC100184713Serine/arginine-rich splicing factor 12 isoform X1. (227 aa)
H2XY34_CIOINUncharacterized protein. (342 aa)
H2XYN3_CIOINDAGKa domain-containing protein. (184 aa)
LOC100186379G patch domain-containing protein 2. (315 aa)
ci-zf(c2h2)-87Zinc finger protein LOC723797 isoform X1. (1251 aa)
H2XZG0_CIOINUncharacterized protein. (740 aa)
H2Y1Q5_CIOINSAP domain-containing protein. (353 aa)
zf(cchc)-24Serine/arginine-rich splicing factor 7. (230 aa)
H2Y226_CIOINUncharacterized protein. (112 aa)
LOC100182428NF-kappa-B inhibitor zeta-like isoform X1. (649 aa)
H2Y2E1_CIOINUncharacterized protein. (95 aa)
H2Y3Q2_CIOINBtz domain-containing protein. (394 aa)
LOC100176856Uncharacterized protein. (956 aa)
F6SCJ9_CIOINUncharacterized protein. (497 aa)
LOC100180966RNA-binding protein 4. (336 aa)
LOC104265829DEAD-box ATP-dependent RNA helicase 20-like; Belongs to the DEAD box helicase family. (573 aa)
Ci-NetTranscription factor protein. (205 aa)
stipSip1/TFIP11 interacting protein. (832 aa)
F6TQ55_CIOINDUF2040 domain-containing protein. (415 aa)
zf(cchc)-12Zinc finger protein (CCHC)-12. (568 aa)
F7AI93_CIOINUncharacterized protein. (784 aa)
LOC100183284SKIP_SNW domain-containing protein. (534 aa)
LOC100177981Ubiquitin-conjugating enzyme E2 R2-like; Belongs to the ubiquitin-conjugating enzyme family. (230 aa)
F6R4T5_CIOINUncharacterized protein. (815 aa)
F6W282_CIOINDNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (313 aa)
F6Z6N2_CIOINTudor domain-containing protein. (236 aa)
F6WRI9_CIOINHECT domain-containing protein. (533 aa)
F7AAE8_CIOINRRM domain-containing protein. (737 aa)
F6XF93_CIOINUncharacterized protein. (410 aa)
F6T7M7_CIOINUncharacterized protein. (492 aa)
moxTranscription factor protein. (176 aa)
SRP54Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (501 aa)
LOC100176319Serine/arginine-rich splicing factor 1B isoform X2. (235 aa)
F6S7T3_CIOINGeneral transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (238 aa)
F6S7U3_CIOINGeneral transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (182 aa)
F6Y7T8_CIOINUncharacterized protein. (283 aa)
LOC100186678Serine/arginine repetitive matrix protein 1-like isoform X2. (1124 aa)
LOC100181403Serine/arginine repetitive matrix protein 1. (428 aa)
F6ZBX8_CIOINUncharacterized protein. (405 aa)
LOC100178584Uncharacterized protein. (990 aa)
F6TE09_CIOINUncharacterized protein. (442 aa)
ciic3Thioredoxin domain-containing protein 3 homolog; May be required during the final stages of sperm tail maturation. May act by reducing disulfide bonds within the sperm components (By similarity). (653 aa)
LOC100183839U5 small nuclear ribonucleoprotein 40 kDa protein. (351 aa)
LOC100177099Protein NRDE2 homolog. (935 aa)
F6RKQ2_CIOINUncharacterized protein. (437 aa)
Zf(u1like)-1U1-type domain-containing protein. (223 aa)
F6Y1N2_CIOINPSP domain-containing protein. (626 aa)
F6S6C5_CIOINRRM domain-containing protein. (455 aa)
F6S6D2_CIOINUncharacterized protein. (589 aa)
F6VII3_CIOINUncharacterized protein. (582 aa)
F7BFG7_CIOINGYF domain-containing protein. (352 aa)
LOC100182155Uncharacterized protein. (427 aa)
LOC100185978Serine/arginine-rich splicing factor 5 isoform X1. (292 aa)
F7A631_CIOINUncharacterized protein. (221 aa)
LOC100185146RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (164 aa)
F6PM95_CIOINWD_REPEATS_REGION domain-containing protein. (322 aa)
F6PRY2_CIOINUncharacterized protein. (655 aa)
LOC1001792332-amino-3-ketobutyrate coenzyme A ligase, mitochondrial-like. (426 aa)
LOC100179163WD_REPEATS_REGION domain-containing protein. (331 aa)
F7AM07_CIOINRRM domain-containing protein. (166 aa)
F6UHH9_CIOINUncharacterized protein; Belongs to the DEAD box helicase family. (572 aa)
Ci-ZF(C3H)-16Zinc finger protein. (218 aa)
F6RWR9_CIOINUncharacterized protein. (533 aa)
F6XGT9_CIOINC3H1-type domain-containing protein. (450 aa)
Zf(c2h2)-88Uncharacterized protein. (912 aa)
F6Z8S6_CIOINUncharacterized protein. (438 aa)
F6ZUL9_CIOINUncharacterized protein. (572 aa)
F7ADN1_CIOINStructural maintenance of chromosomes protein. (1253 aa)
LOC100177805Alpha- and gamma-adaptin-binding protein p34. (275 aa)
LOC100180777serine/Arginine-related protein 53-like. (274 aa)
F6XJG1_CIOINUncharacterized protein. (325 aa)
LOC100175452U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (482 aa)
F6ZML6_CIOINWD_REPEATS_REGION domain-containing protein. (135 aa)
F7A771_CIOINPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (177 aa)
zf(matrin)-2Zinc finger protein. (349 aa)
F6TBF9_CIOINUncharacterized protein. (407 aa)
LOC100184788Non-specific serine/threonine protein kinase. (554 aa)
LOC100183592COP9 signalosome complex subunit 4. (409 aa)
ENSCINP00000005756annotation not available (96 aa)
F6WZT7_CIOINPrp31_C domain-containing protein. (96 aa)
F6XM64_CIOINNOSIC domain-containing protein. (220 aa)
LOC100184779Matrin-type domain-containing protein. (502 aa)
LOC100181928Uncharacterized protein. (686 aa)
LOC104265809Polyglutamine-binding protein 1-like. (208 aa)
F6YDG7_CIOINUncharacterized protein. (697 aa)
H2XJF1_CIOINSF3b1 domain-containing protein. (898 aa)
F6UFC1_CIOINUncharacterized protein. (482 aa)
LOC100179894Werner syndrome ATP-dependent helicase homolog isoform X1. (1194 aa)
HifPAS domain-containing protein. (531 aa)
F6W6K0_CIOINUncharacterized protein. (534 aa)
LOC100180093WD40 repeat-containing protein SMU1. (513 aa)
F6Z3V6_CIOINUncharacterized protein. (1821 aa)
LOC100182616Nuclear inhibitor of protein phosphatase 1-like. (324 aa)
F6WWK0_CIOINWD_REPEATS_REGION domain-containing protein. (508 aa)
Zf(c2h2)-69Uncharacterized protein. (940 aa)
LOC100182715Serine/threonine-protein kinase PRP4 homolog. (594 aa)
Ipf1Homeobox domain-containing protein. (411 aa)
F6RKI1_CIOINUncharacterized protein. (330 aa)
F6SGH3_CIOINRRM domain-containing protein. (167 aa)
F6R6C4_CIOINUncharacterized protein. (802 aa)
F7A5V7_CIOINWD_REPEATS_REGION domain-containing protein. (501 aa)
LOC100175824116 kDa U5 small nuclear ribonucleoprotein component. (973 aa)
F6W8G0_CIOINWD_REPEATS_REGION domain-containing protein. (504 aa)
F6ZTJ9_CIOINUncharacterized protein. (896 aa)
F6R442_CIOINPWI domain-containing protein. (194 aa)
F6Y5T9_CIOINSH2 domain-containing protein. (463 aa)
F6YM31_CIOINTYR_PHOSPHATASE_2 domain-containing protein. (348 aa)
F6ZDT1_CIOINExonuclease domain-containing protein. (256 aa)
F6TL19_CIOINENDO3c domain-containing protein. (364 aa)
F7AYX3_CIOINSCAPER_N domain-containing protein. (1354 aa)
Zf(cxxc)-2CXXC-type domain-containing protein. (410 aa)
F6XIG6_CIOINRPOL4c domain-containing protein. (133 aa)
LOC100179562Uncharacterized protein. (603 aa)
F6X986_CIOINRRM domain-containing protein. (149 aa)
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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