(29 nodes) Histone-lysine N-methyltransferase activity network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Zf(c2h2)-88	Uncharacterized protein. (912 aa)
	H2Y052_CIOIN	Uncharacterized protein. (137 aa)
	H2XZC2_CIOIN	Uncharacterized protein. (245 aa)
	F6UBA5_CIOIN	Uncharacterized protein. (763 aa)
	F6SQS1_CIOIN	SET domain-containing protein. (192 aa)
	F6XZR7_CIOIN	Uncharacterized protein. (543 aa)
	F6UMR8_CIOIN	Uncharacterized protein. (477 aa)
	F6UMH0_CIOIN	WW domain-containing protein. (284 aa)
	F6W5Y6_CIOIN	Uncharacterized protein. (406 aa)
	H2XK62_CIOIN	Histone-lysine N-methyltransferase, H3 lysine-79 specific. (256 aa)
	ci-zf(c2h2)-87	Zinc finger protein LOC723797 isoform X1. (1251 aa)
	smyd1	Uncharacterized protein. (474 aa)
	H2XTY2_CIOIN	Uncharacterized protein. (882 aa)
	H2XN90_CIOIN	Uncharacterized protein. (224 aa)
	F6VYY7_CIOIN	Uncharacterized protein. (589 aa)
	F6RSF3_CIOIN	SET domain-containing protein. (227 aa)
	LOC100186221	Uncharacterized protein. (269 aa)
	F6PWM6_CIOIN	Protein-histidine N-methyltransferase. (488 aa)
	F6S6D2_CIOIN	Uncharacterized protein. (589 aa)
	F6S6C5_CIOIN	RRM domain-containing protein. (455 aa)
	LOC100179624	Histone-lysine N-methyltransferase SMYD3. (430 aa)
	F6W9Z4_CIOIN	Uncharacterized protein. (90 aa)
	F6PQ66_CIOIN	Uncharacterized protein. (1315 aa)
	F6WQW9_CIOIN	Uncharacterized protein. (301 aa)
	F6SXS1_CIOIN	Uncharacterized protein. (932 aa)
	F6PI16_CIOIN	Uncharacterized protein. (234 aa)
	F6UFS8_CIOIN	Uncharacterized protein. (239 aa)
	F6UFS0_CIOIN	Uncharacterized protein. (163 aa)
	F6YDS2_CIOIN	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily. (434 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PQ66_CIOIN	F6S6C5_CIOIN	ENSCINP00000025384	ENSCINP00000011317	Uncharacterized protein.	RRM domain-containing protein.	0.533
F6PQ66_CIOIN	F6S6D2_CIOIN	ENSCINP00000025384	ENSCINP00000011316	Uncharacterized protein.	Uncharacterized protein.	0.567
F6PQ66_CIOIN	F6UBA5_CIOIN	ENSCINP00000025384	ENSCINP00000024984	Uncharacterized protein.	Uncharacterized protein.	0.533
F6PQ66_CIOIN	F6VYY7_CIOIN	ENSCINP00000025384	ENSCINP00000003156	Uncharacterized protein.	Uncharacterized protein.	0.703
F6PQ66_CIOIN	H2XTY2_CIOIN	ENSCINP00000025384	ENSCINP00000033116	Uncharacterized protein.	Uncharacterized protein.	0.599
F6PQ66_CIOIN	H2Y052_CIOIN	ENSCINP00000025384	ENSCINP00000035286	Uncharacterized protein.	Uncharacterized protein.	0.416
F6PWM6_CIOIN	F6VYY7_CIOIN	ENSCINP00000009807	ENSCINP00000003156	Protein-histidine N-methyltransferase.	Uncharacterized protein.	0.634
F6PWM6_CIOIN	F6XZR7_CIOIN	ENSCINP00000009807	ENSCINP00000025830	Protein-histidine N-methyltransferase.	Uncharacterized protein.	0.402
F6PWM6_CIOIN	H2XTY2_CIOIN	ENSCINP00000009807	ENSCINP00000033116	Protein-histidine N-methyltransferase.	Uncharacterized protein.	0.465
F6PWM6_CIOIN	LOC100179624	ENSCINP00000009807	ENSCINP00000013431	Protein-histidine N-methyltransferase.	Histone-lysine N-methyltransferase SMYD3.	0.639
F6PWM6_CIOIN	smyd1	ENSCINP00000009807	ENSCINP00000006865	Protein-histidine N-methyltransferase.	Uncharacterized protein.	0.470
F6RSF3_CIOIN	F6SQS1_CIOIN	ENSCINP00000001120	ENSCINP00000025690	SET domain-containing protein.	SET domain-containing protein.	0.617
F6RSF3_CIOIN	F6UMH0_CIOIN	ENSCINP00000001120	ENSCINP00000025950	SET domain-containing protein.	WW domain-containing protein.	0.489
F6RSF3_CIOIN	F6UMR8_CIOIN	ENSCINP00000001120	ENSCINP00000025949	SET domain-containing protein.	Uncharacterized protein.	0.489
F6RSF3_CIOIN	F6W5Y6_CIOIN	ENSCINP00000001120	ENSCINP00000028043	SET domain-containing protein.	Uncharacterized protein.	0.512
F6RSF3_CIOIN	F6WQW9_CIOIN	ENSCINP00000001120	ENSCINP00000016333	SET domain-containing protein.	Uncharacterized protein.	0.493
F6RSF3_CIOIN	F6YDS2_CIOIN	ENSCINP00000001120	ENSCINP00000024599	SET domain-containing protein.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.535
F6RSF3_CIOIN	H2XK62_CIOIN	ENSCINP00000001120	ENSCINP00000030044	SET domain-containing protein.	Histone-lysine N-methyltransferase, H3 lysine-79 specific.	0.519
F6RSF3_CIOIN	H2XTY2_CIOIN	ENSCINP00000001120	ENSCINP00000033116	SET domain-containing protein.	Uncharacterized protein.	0.525
F6S6C5_CIOIN	F6PQ66_CIOIN	ENSCINP00000011317	ENSCINP00000025384	RRM domain-containing protein.	Uncharacterized protein.	0.533