38 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XYH0_CIOIN	HSL_N domain-containing protein. (106 aa)
	H2Y1Y8_CIOIN	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (114 aa)
	LOC100176113	28S ribosomal protein S18a, mitochondrial. (193 aa)
	F6UJD6_CIOIN	Brix domain-containing protein. (264 aa)
	LOC100179977	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (324 aa)
	LOC100186730	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (204 aa)
	LOC100185465	U3 small nucleolar ribonucleoprotein protein IMP4-like. (288 aa)
	LOC100177507	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (178 aa)
	F6ZV18_CIOIN	G domain-containing protein. (357 aa)
	LOC100180640	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (311 aa)
	LOC100177492	U3 small nucleolar ribonucleoprotein protein IMP3. (181 aa)
	F6TT65_CIOIN	Uncharacterized protein. (217 aa)
	F7BND4_CIOIN	Uncharacterized protein. (367 aa)
	LOC100187432	39S ribosomal protein L11, mitochondrial-like; Belongs to the universal ribosomal protein uL11 family. (196 aa)
	LOC100185869	40S ribosomal protein S11-like. (157 aa)
	LOC100182700	SAP domain-containing protein. (320 aa)
	LOC100183722	Ribosome production factor 1-like. (351 aa)
	F7A373_CIOIN	S4 RNA-binding domain-containing protein. (102 aa)
	F6ZKI9_CIOIN	40S_S4_C domain-containing protein. (80 aa)
	LOC100186763	60S ribosomal protein L5. (296 aa)
	LOC100177652	60S ribosomal protein L9. (191 aa)
	LOC100179281	39S ribosomal protein L18, mitochondrial-like. (214 aa)
	LOC100184403	Uncharacterized protein. (237 aa)
	LOC100180912	rRNA-processing protein UTP23 homolog. (222 aa)
	Ci-ZF(C2H2)-86	Zinc finger protein. (315 aa)
	LOC100185367	60S ribosomal protein L8. (256 aa)
	LOC100184231	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	F6YF30_CIOIN	Uncharacterized protein. (88 aa)
	F6VSD5_CIOIN	Uncharacterized protein. (417 aa)
	LOC100176470	Brix domain-containing protein. (308 aa)
	F6TD74_CIOIN	Uncharacterized protein. (362 aa)
	H2XPC5_CIOIN	Ribosomal_L16 domain-containing protein. (183 aa)
	LOC100184464	Uncharacterized protein. (434 aa)
	H2XRY8_CIOIN	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (404 aa)
	rps13	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	LOC100184857	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (191 aa)
	H2XY32_CIOIN	Helicase C-terminal domain-containing protein. (181 aa)
	LOC100179843	Uncharacterized protein LOC100179843. (324 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6TD74_CIOIN	F6TT65_CIOIN	ENSCINP00000025648	ENSCINP00000008858	Uncharacterized protein.	Uncharacterized protein.	0.726
F6TD74_CIOIN	F6YF30_CIOIN	ENSCINP00000025648	ENSCINP00000024283	Uncharacterized protein.	Uncharacterized protein.	0.887
F6TD74_CIOIN	F6ZKI9_CIOIN	ENSCINP00000025648	ENSCINP00000015561	Uncharacterized protein.	40S_S4_C domain-containing protein.	0.888
F6TD74_CIOIN	F6ZV18_CIOIN	ENSCINP00000025648	ENSCINP00000007582	Uncharacterized protein.	G domain-containing protein.	0.785
F6TD74_CIOIN	F7A373_CIOIN	ENSCINP00000025648	ENSCINP00000015550	Uncharacterized protein.	S4 RNA-binding domain-containing protein.	0.888
F6TD74_CIOIN	H2XPC5_CIOIN	ENSCINP00000025648	ENSCINP00000031508	Uncharacterized protein.	Ribosomal_L16 domain-containing protein.	0.904
F6TD74_CIOIN	H2Y1Y8_CIOIN	ENSCINP00000025648	ENSCINP00000035923	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.952
F6TD74_CIOIN	LOC100176113	ENSCINP00000025648	ENSCINP00000034691	Uncharacterized protein.	28S ribosomal protein S18a, mitochondrial.	0.906
F6TD74_CIOIN	LOC100177492	ENSCINP00000025648	ENSCINP00000008737	Uncharacterized protein.	U3 small nucleolar ribonucleoprotein protein IMP3.	0.926
F6TD74_CIOIN	LOC100177507	ENSCINP00000025648	ENSCINP00000006833	Uncharacterized protein.	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.952
F6TD74_CIOIN	LOC100177652	ENSCINP00000025648	ENSCINP00000018927	Uncharacterized protein.	60S ribosomal protein L9.	0.795
F6TD74_CIOIN	LOC100179281	ENSCINP00000025648	ENSCINP00000019322	Uncharacterized protein.	39S ribosomal protein L18, mitochondrial-like.	0.499
F6TD74_CIOIN	LOC100180640	ENSCINP00000025648	ENSCINP00000008143	Uncharacterized protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.938
F6TD74_CIOIN	LOC100184231	ENSCINP00000025648	ENSCINP00000023959	Uncharacterized protein.	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	0.924
F6TD74_CIOIN	LOC100184403	ENSCINP00000025648	ENSCINP00000020009	Uncharacterized protein.	Uncharacterized protein.	0.777
F6TD74_CIOIN	LOC100184857	ENSCINP00000025648	ENSCINP00000033743	Uncharacterized protein.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.966
F6TD74_CIOIN	LOC100185367	ENSCINP00000025648	ENSCINP00000023826	Uncharacterized protein.	60S ribosomal protein L8.	0.943
F6TD74_CIOIN	LOC100185465	ENSCINP00000025648	ENSCINP00000005842	Uncharacterized protein.	U3 small nucleolar ribonucleoprotein protein IMP4-like.	0.692
F6TD74_CIOIN	LOC100185869	ENSCINP00000025648	ENSCINP00000010826	Uncharacterized protein.	40S ribosomal protein S11-like.	0.973
F6TD74_CIOIN	LOC100186763	ENSCINP00000025648	ENSCINP00000017093	Uncharacterized protein.	60S ribosomal protein L5.	0.952