38 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100185508	WD repeat-containing protein 43. (630 aa)
	LOC100183259	Uncharacterized protein. (721 aa)
	LOC100183338	Serum response factor-binding protein 1-like. (289 aa)
	F6YBA5_CIOIN	Uncharacterized protein. (1170 aa)
	LOC100182572	Bystin-like. (436 aa)
	LOC100179345	Uncharacterized protein LOC100179345. (235 aa)
	LOC100179977	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (324 aa)
	F6YMZ5_CIOIN	Uncharacterized protein. (68 aa)
	F6RA65_CIOIN	RIO domain-containing protein. (504 aa)
	LOC100175648	pre-rRNA-processing protein TSR2 homolog. (194 aa)
	F6QDE3_CIOIN	Bms1-type G domain-containing protein. (1061 aa)
	F6ZN43_CIOIN	WD_REPEATS_REGION domain-containing protein. (351 aa)
	F6Y8C3_CIOIN	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (956 aa)
	F6TJY9_CIOIN	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (79 aa)
	LOC100181934	Activator of basal transcription 1. (243 aa)
	F6PLR6_CIOIN	Uncharacterized protein. (176 aa)
	LOC100176459	Protein KRI1 homolog. (657 aa)
	LOC100187346	Uncharacterized protein. (580 aa)
	F6ZL99_CIOIN	Utp12 domain-containing protein. (238 aa)
	LOC100183873	WD_REPEATS_REGION domain-containing protein. (447 aa)
	LOC100183227	WD_REPEATS_REGION domain-containing protein. (708 aa)
	F6Q4K7_CIOIN	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (205 aa)
	LOC100180054	U3 small nucleolar RNA-associated protein 4 homolog. (666 aa)
	F6ZIU2_CIOIN	Uncharacterized protein. (324 aa)
	F6W132_CIOIN	BP28CT domain-containing protein. (414 aa)
	F6WWW4_CIOIN	WD_REPEATS_REGION domain-containing protein. (786 aa)
	F6XG84_CIOIN	U3snoRNP10 domain-containing protein. (413 aa)
	F6R384_CIOIN	Uncharacterized protein. (240 aa)
	F6XVJ4_CIOIN	Uncharacterized protein. (733 aa)
	LOC100180912	rRNA-processing protein UTP23 homolog. (222 aa)
	F6TCX3_CIOIN	Uncharacterized protein. (167 aa)
	F6ZRR5_CIOIN	Uncharacterized protein. (475 aa)
	LOC100179273	Sas10 domain-containing protein. (465 aa)
	LOC100180269	Uncharacterized protein. (866 aa)
	LOC100181225	U6 snRNA-associated Sm-like protein LSm6. (82 aa)
	LOC100186308	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (148 aa)
	LOC100184042	Uncharacterized protein. (611 aa)
	LOC100181824	Bms1-type G domain-containing protein. (784 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PLR6_CIOIN	F6Q4K7_CIOIN	ENSCINP00000009882	ENSCINP00000013007	Uncharacterized protein.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.772
F6PLR6_CIOIN	F6QDE3_CIOIN	ENSCINP00000009882	ENSCINP00000006493	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.608
F6PLR6_CIOIN	F6R384_CIOIN	ENSCINP00000009882	ENSCINP00000020346	Uncharacterized protein.	Uncharacterized protein.	0.661
F6PLR6_CIOIN	F6RA65_CIOIN	ENSCINP00000009882	ENSCINP00000004807	Uncharacterized protein.	RIO domain-containing protein.	0.955
F6PLR6_CIOIN	F6TJY9_CIOIN	ENSCINP00000009882	ENSCINP00000007489	Uncharacterized protein.	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.814
F6PLR6_CIOIN	F6Y8C3_CIOIN	ENSCINP00000009882	ENSCINP00000007371	Uncharacterized protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.426
F6PLR6_CIOIN	F6YMZ5_CIOIN	ENSCINP00000009882	ENSCINP00000004592	Uncharacterized protein.	Uncharacterized protein.	0.658
F6PLR6_CIOIN	F6ZRR5_CIOIN	ENSCINP00000009882	ENSCINP00000028219	Uncharacterized protein.	Uncharacterized protein.	0.422
F6PLR6_CIOIN	LOC100175648	ENSCINP00000009882	ENSCINP00000004872	Uncharacterized protein.	pre-rRNA-processing protein TSR2 homolog.	0.555
F6PLR6_CIOIN	LOC100179273	ENSCINP00000009882	ENSCINP00000030416	Uncharacterized protein.	Sas10 domain-containing protein.	0.429
F6PLR6_CIOIN	LOC100180269	ENSCINP00000009882	ENSCINP00000032357	Uncharacterized protein.	Uncharacterized protein.	0.772
F6PLR6_CIOIN	LOC100181824	ENSCINP00000009882	ENSCINP00000036023	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.955
F6PLR6_CIOIN	LOC100182572	ENSCINP00000009882	ENSCINP00000003332	Uncharacterized protein.	Bystin-like.	0.942
F6PLR6_CIOIN	LOC100183227	ENSCINP00000009882	ENSCINP00000011688	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.431
F6PLR6_CIOIN	LOC100183259	ENSCINP00000009882	ENSCINP00000000681	Uncharacterized protein.	Uncharacterized protein.	0.578
F6PLR6_CIOIN	LOC100186308	ENSCINP00000009882	ENSCINP00000034355	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.513
F6Q4K7_CIOIN	F6PLR6_CIOIN	ENSCINP00000013007	ENSCINP00000009882	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	Uncharacterized protein.	0.772
F6Q4K7_CIOIN	F6QDE3_CIOIN	ENSCINP00000013007	ENSCINP00000006493	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	Bms1-type G domain-containing protein.	0.956
F6Q4K7_CIOIN	F6RA65_CIOIN	ENSCINP00000013007	ENSCINP00000004807	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	RIO domain-containing protein.	0.896
F6Q4K7_CIOIN	F6TCX3_CIOIN	ENSCINP00000013007	ENSCINP00000025655	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	Uncharacterized protein.	0.822