STRINGSTRING
F6YBA5_CIOIN F6YBA5_CIOIN LOC100182572 LOC100182572 LOC100185465 LOC100185465 F6QDE3_CIOIN F6QDE3_CIOIN LOC100177492 LOC100177492 zf(c2h2)-102 zf(c2h2)-102 F6U2M6_CIOIN F6U2M6_CIOIN F6QNB6_CIOIN F6QNB6_CIOIN LOC100180728 LOC100180728 LOC100187346 LOC100187346 F6ZL99_CIOIN F6ZL99_CIOIN F6U609_CIOIN F6U609_CIOIN LOC100181113 LOC100181113 F7AM88_CIOIN F7AM88_CIOIN F6W132_CIOIN F6W132_CIOIN F6WWW4_CIOIN F6WWW4_CIOIN F6XG84_CIOIN F6XG84_CIOIN F6XVJ4_CIOIN F6XVJ4_CIOIN F7A9P4_CIOIN F7A9P4_CIOIN Zf(c2h2)-101 Zf(c2h2)-101 LOC100175348 LOC100175348 H2XM57_CIOIN H2XM57_CIOIN LOC100178209 LOC100178209 H2Y0K0_CIOIN H2Y0K0_CIOIN LOC100184042 LOC100184042 LOC100181824 LOC100181824 H2Y3C6_CIOIN H2Y3C6_CIOIN LOC100182620 LOC100182620 H2Y3M4_CIOIN H2Y3M4_CIOIN
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
F6YBA5_CIOINUncharacterized protein. (1170 aa)
LOC100182572Bystin-like. (436 aa)
LOC100185465U3 small nucleolar ribonucleoprotein protein IMP4-like. (288 aa)
F6QDE3_CIOINBms1-type G domain-containing protein. (1061 aa)
LOC100177492U3 small nucleolar ribonucleoprotein protein IMP3. (181 aa)
zf(c2h2)-102ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase. (706 aa)
F6U2M6_CIOINPUA domain-containing protein. (528 aa)
F6QNB6_CIOINUncharacterized protein. (157 aa)
LOC100180728WD_REPEATS_REGION domain-containing protein. (453 aa)
LOC100187346Uncharacterized protein. (580 aa)
F6ZL99_CIOINUtp12 domain-containing protein. (238 aa)
F6U609_CIOINNop domain-containing protein. (533 aa)
LOC100181113H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (198 aa)
F7AM88_CIOINUncharacterized protein. (302 aa)
F6W132_CIOINBP28CT domain-containing protein. (414 aa)
F6WWW4_CIOINWD_REPEATS_REGION domain-containing protein. (786 aa)
F6XG84_CIOINU3snoRNP10 domain-containing protein. (413 aa)
F6XVJ4_CIOINUncharacterized protein. (733 aa)
F7A9P4_CIOINNUC194 domain-containing protein. (726 aa)
Zf(c2h2)-101C2H2-type domain-containing protein. (212 aa)
LOC100175348U8 snoRNA-decapping enzyme-like isoform X2. (202 aa)
H2XM57_CIOINNudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family. (161 aa)
LOC100178209Nop domain-containing protein. (561 aa)
H2Y0K0_CIOINNudix hydrolase domain-containing protein. (175 aa)
LOC100184042Uncharacterized protein. (611 aa)
LOC100181824Bms1-type G domain-containing protein. (784 aa)
H2Y3C6_CIOINUncharacterized protein; Belongs to the PI3/PI4-kinase family. (540 aa)
LOC100182620Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
H2Y3M4_CIOINUncharacterized protein. (185 aa)
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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