(65 nodes) Negative regulation of cellular catabolic process network (Ciona intestinalis)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F7A7B2_CIOIN	Uncharacterized protein. (288 aa)
	F6ZAD3_CIOIN	Rap-GAP domain-containing protein. (1434 aa)
	LOC100177099	Protein NRDE2 homolog. (935 aa)
	LOC100181206	TPR_REGION domain-containing protein. (1027 aa)
	foxk	Uncharacterized protein. (614 aa)
	LOC100185251-2	Zinc finger protein. (339 aa)
	F6WPI9_CIOIN	FPL domain-containing protein. (803 aa)
	LOC100187055	SEFIR domain-containing protein. (513 aa)
	F6U2M6_CIOIN	PUA domain-containing protein. (528 aa)
	LOC100187265	Uncharacterized protein. (949 aa)
	LOC100176903	Carboxypeptidase; Belongs to the peptidase S10 family. (420 aa)
	F6TTI3_CIOIN	Ubiquitin carboxyl-terminal hydrolase. (512 aa)
	F6YGJ7_CIOIN	Uncharacterized protein; Belongs to the peptidase C19 family. (1099 aa)
	F6YGK4_CIOIN	Uncharacterized protein. (591 aa)
	LOC100183289	tRNA (Cytosine(38)-C(5))-methyltransferase-like; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (343 aa)
	LOC100181041	Myotubularin-related protein 9 isoform X1. (562 aa)
	LOC100181489	GLTP domain-containing protein. (226 aa)
	LOC100177507	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (178 aa)
	F6W6K0_CIOIN	Uncharacterized protein. (534 aa)
	LOC100179496	Sec1 family domain-containing protein 1; Belongs to the STXBP/unc-18/SEC1 family. (622 aa)
	LOC100181643	poly(A) RNA polymerase gld-2 isoform X1. (713 aa)
	F7AMQ2_CIOIN	TPR_REGION domain-containing protein. (186 aa)
	F6VK85_CIOIN	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (754 aa)
	LOC100175935	Ubiquitin carboxyl-terminal hydrolase. (328 aa)
	F6SFZ3_CIOIN	Nbas_N domain-containing protein. (337 aa)
	H2Y1J7_CIOIN	RRM domain-containing protein. (173 aa)
	H2Y1J5_CIOIN	Uncharacterized protein. (448 aa)
	H2Y0W5_CIOIN	FATC domain-containing protein. (201 aa)
	H2Y066_CIOIN	Uncharacterized protein. (361 aa)
	H2XY37_CIOIN	Uncharacterized protein. (127 aa)
	LOC100183633	Death-associated protein 1-like. (103 aa)
	H2XWT8_CIOIN	Uncharacterized protein. (206 aa)
	H2XVP2_CIOIN	Uncharacterized protein. (226 aa)
	H2XV25_CIOIN	Uncharacterized protein. (652 aa)
	H2XSM3_CIOIN	Uncharacterized protein. (291 aa)
	H2XRY8_CIOIN	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (404 aa)
	H2XQ02_CIOIN	Uncharacterized protein. (288 aa)
	H2XPH2_CIOIN	DUF3385 domain-containing protein. (265 aa)
	H2XP61_CIOIN	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (236 aa)
	H2XMY5_CIOIN	Uncharacterized protein. (281 aa)
	H2XMJ3_CIOIN	Uncharacterized protein. (346 aa)
	H2XM17_CIOIN	FAT domain-containing protein. (187 aa)
	H2XKM9_CIOIN	Uncharacterized protein. (182 aa)
	H2XJJ8_CIOIN	RRM domain-containing protein. (229 aa)
	LOC100187458	Small VCP/p97-interacting protein. (76 aa)
	F6UV55_CIOIN	Uncharacterized protein. (242 aa)
	F6YUX9_CIOIN	RRM domain-containing protein. (134 aa)
	LOC100181974	WD repeat-containing protein 6-like. (158 aa)
	F6TDQ4_CIOIN	Ubiquitin-like domain-containing protein. (251 aa)
	LOC100175152	Bis(5'-adenosyl)-triphosphatase. (154 aa)
	F6V4V0_CIOIN	Sortilin. (1459 aa)
	LOC100179846	Lymphokine-activated killer T-cell-originated protein kinase isoform X1. (344 aa)
	LOC100183193	Non-canonical poly(A) RNA polymerase PAPD5. (391 aa)
	F6VA91_CIOIN	Uncharacterized protein. (126 aa)
	F6ZLD5_CIOIN	Protein kinase domain-containing protein. (164 aa)
	F6QXN6_CIOIN	RRM domain-containing protein. (369 aa)
	LOC100186863	PDZ domain-containing protein GIPC1. (316 aa)
	F6XKA2_CIOIN	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (654 aa)
	F6Z6J9_CIOIN	NTR domain-containing protein. (193 aa)
	F6Z6K5_CIOIN	Suppressor of fused homolog. (473 aa)
	LOC100180438	Polymerase delta-interacting protein 2-like. (376 aa)
	F6X3A4_CIOIN	Uncharacterized protein. (594 aa)
	F6X3C5_CIOIN	HA2 domain-containing protein. (413 aa)
	LOC100177439	Serine/threonine/tyrosine-interacting protein-like. (218 aa)
	F7ANZ8_CIOIN	Uncharacterized protein. (293 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SFZ3_CIOIN	H2XQ02_CIOIN	ENSCINP00000000468	ENSCINP00000031736	Nbas_N domain-containing protein.	Uncharacterized protein.	0.540
F6TDQ4_CIOIN	F7ANZ8_CIOIN	ENSCINP00000025635	ENSCINP00000015289	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.886
F6TTI3_CIOIN	F6YGJ7_CIOIN	ENSCINP00000008849	ENSCINP00000008727	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.637
F6TTI3_CIOIN	LOC100175935	ENSCINP00000008849	ENSCINP00000001676	Ubiquitin carboxyl-terminal hydrolase.	Ubiquitin carboxyl-terminal hydrolase.	0.724
F6U2M6_CIOIN	F6XKA2_CIOIN	ENSCINP00000009502	ENSCINP00000019352	PUA domain-containing protein.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.569
F6U2M6_CIOIN	H2XP61_CIOIN	ENSCINP00000009502	ENSCINP00000031444	PUA domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.994
F6U2M6_CIOIN	H2XRY8_CIOIN	ENSCINP00000009502	ENSCINP00000032422	PUA domain-containing protein.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.847
F6U2M6_CIOIN	LOC100177507	ENSCINP00000009502	ENSCINP00000006833	PUA domain-containing protein.	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.540
F6VA91_CIOIN	F6W6K0_CIOIN	ENSCINP00000022570	ENSCINP00000004081	Uncharacterized protein.	Uncharacterized protein.	0.508
F6VA91_CIOIN	F6YUX9_CIOIN	ENSCINP00000022570	ENSCINP00000026103	Uncharacterized protein.	RRM domain-containing protein.	0.405
F6VK85_CIOIN	F6ZAD3_CIOIN	ENSCINP00000002868	ENSCINP00000014731	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Rap-GAP domain-containing protein.	0.623
F6VK85_CIOIN	H2XM17_CIOIN	ENSCINP00000002868	ENSCINP00000030699	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	FAT domain-containing protein.	0.943
F6VK85_CIOIN	H2XPH2_CIOIN	ENSCINP00000002868	ENSCINP00000031555	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	DUF3385 domain-containing protein.	0.929
F6VK85_CIOIN	H2XV25_CIOIN	ENSCINP00000002868	ENSCINP00000033509	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.888
F6VK85_CIOIN	H2XWT8_CIOIN	ENSCINP00000002868	ENSCINP00000034122	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.925
F6VK85_CIOIN	H2Y066_CIOIN	ENSCINP00000002868	ENSCINP00000035300	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.929
F6VK85_CIOIN	H2Y0W5_CIOIN	ENSCINP00000002868	ENSCINP00000035549	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	FATC domain-containing protein.	0.893
F6VK85_CIOIN	LOC100187265	ENSCINP00000002868	ENSCINP00000009399	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.666
F6W6K0_CIOIN	F6VA91_CIOIN	ENSCINP00000004081	ENSCINP00000022570	Uncharacterized protein.	Uncharacterized protein.	0.508
F6W6K0_CIOIN	F6X3A4_CIOIN	ENSCINP00000004081	ENSCINP00000015974	Uncharacterized protein.	Uncharacterized protein.	0.608