39 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100183259	Uncharacterized protein. (721 aa)
	F6YWB6_CIOIN	Nucleolar protein 6. (831 aa)
	F6UDJ0_CIOIN	Uncharacterized protein. (1742 aa)
	LOC100178939	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (579 aa)
	LOC100185465	U3 small nucleolar ribonucleoprotein protein IMP4-like. (288 aa)
	F6ZN98_CIOIN	DRIM domain-containing protein. (2648 aa)
	F6ZN43_CIOIN	WD_REPEATS_REGION domain-containing protein. (351 aa)
	LOC100177492	U3 small nucleolar ribonucleoprotein protein IMP3. (181 aa)
	zf(c2h2)-102	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase. (706 aa)
	LOC100180728	WD_REPEATS_REGION domain-containing protein. (453 aa)
	LOC100186181	rRNA 2'-O-methyltransferase fibrillarin. (308 aa)
	LOC100187346	Uncharacterized protein. (580 aa)
	F6ZL99_CIOIN	Utp12 domain-containing protein. (238 aa)
	LOC100183873	WD_REPEATS_REGION domain-containing protein. (447 aa)
	F6U609_CIOIN	Nop domain-containing protein. (533 aa)
	LOC100183227	WD_REPEATS_REGION domain-containing protein. (708 aa)
	LOC100186454	Uncharacterized protein. (907 aa)
	LOC100180054	U3 small nucleolar RNA-associated protein 4 homolog. (666 aa)
	F6W132_CIOIN	BP28CT domain-containing protein. (414 aa)
	F6WWW4_CIOIN	WD_REPEATS_REGION domain-containing protein. (786 aa)
	F6XG84_CIOIN	U3snoRNP10 domain-containing protein. (413 aa)
	LOC100184403	Uncharacterized protein. (237 aa)
	F6TAD8_CIOIN	CBF domain-containing protein. (511 aa)
	F6XVJ4_CIOIN	Uncharacterized protein. (733 aa)
	LOC100180912	rRNA-processing protein UTP23 homolog. (222 aa)
	F7A9P4_CIOIN	NUC194 domain-containing protein. (726 aa)
	F6TCX3_CIOIN	Uncharacterized protein. (167 aa)
	F6T6V3_CIOIN	Nucleolar protein 6. (234 aa)
	LOC100178413	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (358 aa)
	LOC100179273	Sas10 domain-containing protein. (465 aa)
	H2XM74_CIOIN	Uncharacterized protein. (234 aa)
	H2XQ81_CIOIN	PINc domain-containing protein. (201 aa)
	LOC100180269	Uncharacterized protein. (866 aa)
	H2XTN0_CIOIN	Uncharacterized protein. (370 aa)
	H2XWG7_CIOIN	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (233 aa)
	LOC100178209	Nop domain-containing protein. (561 aa)
	LOC100184042	Uncharacterized protein. (611 aa)
	H2Y3C6_CIOIN	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (540 aa)
	H2Y3M4_CIOIN	Uncharacterized protein. (185 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6T6V3_CIOIN	F6TAD8_CIOIN	ENSCINP00000027701	ENSCINP00000022325	Nucleolar protein 6.	CBF domain-containing protein.	0.962
F6T6V3_CIOIN	F6TCX3_CIOIN	ENSCINP00000027701	ENSCINP00000025655	Nucleolar protein 6.	Uncharacterized protein.	0.930
F6T6V3_CIOIN	F6U609_CIOIN	ENSCINP00000027701	ENSCINP00000011290	Nucleolar protein 6.	Nop domain-containing protein.	0.965
F6T6V3_CIOIN	F6UDJ0_CIOIN	ENSCINP00000027701	ENSCINP00000005538	Nucleolar protein 6.	Uncharacterized protein.	0.991
F6T6V3_CIOIN	F6W132_CIOIN	ENSCINP00000027701	ENSCINP00000018781	Nucleolar protein 6.	BP28CT domain-containing protein.	0.933
F6T6V3_CIOIN	F6WWW4_CIOIN	ENSCINP00000027701	ENSCINP00000019387	Nucleolar protein 6.	WD_REPEATS_REGION domain-containing protein.	0.987
F6T6V3_CIOIN	F6XG84_CIOIN	ENSCINP00000027701	ENSCINP00000019974	Nucleolar protein 6.	U3snoRNP10 domain-containing protein.	0.933
F6T6V3_CIOIN	F6XVJ4_CIOIN	ENSCINP00000027701	ENSCINP00000022758	Nucleolar protein 6.	Uncharacterized protein.	0.933
F6T6V3_CIOIN	F6YWB6_CIOIN	ENSCINP00000027701	ENSCINP00000000848	Nucleolar protein 6.	Nucleolar protein 6.	0.970
F6T6V3_CIOIN	F6ZL99_CIOIN	ENSCINP00000027701	ENSCINP00000010469	Nucleolar protein 6.	Utp12 domain-containing protein.	0.862
F6T6V3_CIOIN	F6ZN43_CIOIN	ENSCINP00000027701	ENSCINP00000006950	Nucleolar protein 6.	WD_REPEATS_REGION domain-containing protein.	0.930
F6T6V3_CIOIN	F6ZN98_CIOIN	ENSCINP00000027701	ENSCINP00000006949	Nucleolar protein 6.	DRIM domain-containing protein.	0.976
F6T6V3_CIOIN	H2XQ81_CIOIN	ENSCINP00000027701	ENSCINP00000031815	Nucleolar protein 6.	PINc domain-containing protein.	0.950
F6T6V3_CIOIN	H2XTN0_CIOIN	ENSCINP00000027701	ENSCINP00000033014	Nucleolar protein 6.	Uncharacterized protein.	0.976
F6T6V3_CIOIN	H2XWG7_CIOIN	ENSCINP00000027701	ENSCINP00000034001	Nucleolar protein 6.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.947
F6T6V3_CIOIN	LOC100177492	ENSCINP00000027701	ENSCINP00000008737	Nucleolar protein 6.	U3 small nucleolar ribonucleoprotein protein IMP3.	0.940
F6T6V3_CIOIN	LOC100178209	ENSCINP00000027701	ENSCINP00000034401	Nucleolar protein 6.	Nop domain-containing protein.	0.970
F6T6V3_CIOIN	LOC100178413	ENSCINP00000027701	ENSCINP00000030415	Nucleolar protein 6.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.956
F6T6V3_CIOIN	LOC100178939	ENSCINP00000027701	ENSCINP00000005569	Nucleolar protein 6.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.979
F6T6V3_CIOIN	LOC100179273	ENSCINP00000027701	ENSCINP00000030416	Nucleolar protein 6.	Sas10 domain-containing protein.	0.967