39 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	F6WQ08_CIOIN	Protein kinase domain-containing protein. (473 aa)
	F6WGY1_CIOIN	Structure-specific endonuclease subunit SLX1 homolog; Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA; Belongs to the SLX1 family. (246 aa)
	F6RJ65_CIOIN	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (268 aa)
	LOC100175935	Ubiquitin carboxyl-terminal hydrolase. (328 aa)
	Sir2-d	Deacetylase sirtuin-type domain-containing protein. (91 aa)
	F6W7K5_CIOIN	T-complex protein 1 subunit gamma. (530 aa)
	LOC100181285	T-complex protein 1 subunit gamma. (543 aa)
	F6RZ99_CIOIN	Zinc-hook domain-containing protein. (477 aa)
	F6RYY5_CIOIN	AAA_23 domain-containing protein. (400 aa)
	F6W6K0_CIOIN	Uncharacterized protein. (534 aa)
	F6UD77_CIOIN	ANK_REP_REGION domain-containing protein. (538 aa)
	Mapkk7	Protein kinase domain-containing protein. (478 aa)
	F6PL57_CIOIN	Uncharacterized protein. (1087 aa)
	F6WYC4_CIOIN	TFIIS N-terminal domain-containing protein. (494 aa)
	F6TV58_CIOIN	Uncharacterized protein. (147 aa)
	zf(c2h2)-102	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase. (706 aa)
	F6U2M6_CIOIN	PUA domain-containing protein. (528 aa)
	LOC100177411	RuvB-like helicase; Belongs to the RuvB family. (467 aa)
	F6SK60_CIOIN	Uncharacterized protein. (372 aa)
	LOC100181431	Uncharacterized protein. (535 aa)
	LOC100176488	T-complex protein 1 subunit delta. (540 aa)
	LOC100186474	Uncharacterized protein LOC100186474 isoform X1. (164 aa)
	LOC100181478	T-complex protein 1 subunit epsilon-like. (538 aa)
	F7ABN7_CIOIN	F-box domain-containing protein. (241 aa)
	F6TE72_CIOIN	Protein kinase domain-containing protein. (172 aa)
	F6VBZ6_CIOIN	Telo_bind domain-containing protein. (527 aa)
	nfrkb	Uncharacterized protein. (310 aa)
	F6X0L7_CIOIN	FHA_2 domain-containing protein. (571 aa)
	H2XJT4_CIOIN	PHD-type domain-containing protein. (508 aa)
	H2XK76_CIOIN	Poly [ADP-ribose] polymerase. (375 aa)
	H2XN24_CIOIN	PI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family. (158 aa)
	H2XNN7_CIOIN	Uncharacterized protein. (112 aa)
	H2XNU2_CIOIN	Uncharacterized protein. (214 aa)
	H2XP61_CIOIN	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (236 aa)
	H2XR98_CIOIN	Protein kinase domain-containing protein. (365 aa)
	H2XR99_CIOIN	FHA domain-containing protein. (427 aa)
	H2XRB3_CIOIN	Uncharacterized protein. (548 aa)
	H2XXJ7_CIOIN	Uncharacterized protein. (347 aa)
	H2Y2T2_CIOIN	FAT domain-containing protein. (235 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6RJ65_CIOIN	F6RYY5_CIOIN	ENSCINP00000001490	ENSCINP00000003245	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	AAA_23 domain-containing protein.	0.707
F6RJ65_CIOIN	F6RZ99_CIOIN	ENSCINP00000001490	ENSCINP00000003235	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Zinc-hook domain-containing protein.	0.707
F6RJ65_CIOIN	F6SK60_CIOIN	ENSCINP00000001490	ENSCINP00000010637	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.454
F6RJ65_CIOIN	F6TV58_CIOIN	ENSCINP00000001490	ENSCINP00000008579	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.969
F6RJ65_CIOIN	F6WGY1_CIOIN	ENSCINP00000001490	ENSCINP00000000037	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Structure-specific endonuclease subunit SLX1 homolog; Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA; Belongs to the SLX1 family.	0.481
F6RJ65_CIOIN	H2XN24_CIOIN	ENSCINP00000001490	ENSCINP00000031057	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	PI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family.	0.733
F6RJ65_CIOIN	H2XNU2_CIOIN	ENSCINP00000001490	ENSCINP00000031325	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.707
F6RJ65_CIOIN	H2Y2T2_CIOIN	ENSCINP00000001490	ENSCINP00000036217	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	FAT domain-containing protein.	0.949
F6RJ65_CIOIN	zf(c2h2)-102	ENSCINP00000001490	ENSCINP00000009339	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.	0.768
F6RYY5_CIOIN	F6RJ65_CIOIN	ENSCINP00000003245	ENSCINP00000001490	AAA_23 domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.707
F6RYY5_CIOIN	F6RZ99_CIOIN	ENSCINP00000003245	ENSCINP00000003235	AAA_23 domain-containing protein.	Zinc-hook domain-containing protein.	0.900
F6RYY5_CIOIN	F6TV58_CIOIN	ENSCINP00000003245	ENSCINP00000008579	AAA_23 domain-containing protein.	Uncharacterized protein.	0.567
F6RYY5_CIOIN	H2XN24_CIOIN	ENSCINP00000003245	ENSCINP00000031057	AAA_23 domain-containing protein.	PI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family.	0.567
F6RYY5_CIOIN	H2XNU2_CIOIN	ENSCINP00000003245	ENSCINP00000031325	AAA_23 domain-containing protein.	Uncharacterized protein.	0.971
F6RYY5_CIOIN	H2Y2T2_CIOIN	ENSCINP00000003245	ENSCINP00000036217	AAA_23 domain-containing protein.	FAT domain-containing protein.	0.707
F6RYY5_CIOIN	zf(c2h2)-102	ENSCINP00000003245	ENSCINP00000009339	AAA_23 domain-containing protein.	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.	0.589
F6RZ99_CIOIN	F6RJ65_CIOIN	ENSCINP00000003235	ENSCINP00000001490	Zinc-hook domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.707
F6RZ99_CIOIN	F6RYY5_CIOIN	ENSCINP00000003235	ENSCINP00000003245	Zinc-hook domain-containing protein.	AAA_23 domain-containing protein.	0.900
F6RZ99_CIOIN	F6TV58_CIOIN	ENSCINP00000003235	ENSCINP00000008579	Zinc-hook domain-containing protein.	Uncharacterized protein.	0.567
F6RZ99_CIOIN	H2XN24_CIOIN	ENSCINP00000003235	ENSCINP00000031057	Zinc-hook domain-containing protein.	PI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family.	0.567