(7 nodes) Oxidized DNA binding network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6UCG0_CIOIN	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR). (943 aa)
	F6PHP1_CIOIN	ENDO3c domain-containing protein. (170 aa)
	LOC100179894	Werner syndrome ATP-dependent helicase homolog isoform X1. (1194 aa)
	LOC100183893	Uncharacterized protein. (480 aa)
	F6VBZ6_CIOIN	Telo_bind domain-containing protein. (527 aa)
	F6TL19_CIOIN	ENDO3c domain-containing protein. (364 aa)
	F6Q9T0_CIOIN	Uncharacterized protein. (231 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PHP1_CIOIN	F6TL19_CIOIN	ENSCINP00000006291	ENSCINP00000021491	ENDO3c domain-containing protein.	ENDO3c domain-containing protein.	0.654
F6PHP1_CIOIN	F6UCG0_CIOIN	ENSCINP00000006291	ENSCINP00000012971	ENDO3c domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.593
F6PHP1_CIOIN	LOC100179894	ENSCINP00000006291	ENSCINP00000004562	ENDO3c domain-containing protein.	Werner syndrome ATP-dependent helicase homolog isoform X1.	0.654
F6PHP1_CIOIN	LOC100183893	ENSCINP00000006291	ENSCINP00000036521	ENDO3c domain-containing protein.	Uncharacterized protein.	0.507
F6Q9T0_CIOIN	F6UCG0_CIOIN	ENSCINP00000018150	ENSCINP00000012971	Uncharacterized protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.780
F6Q9T0_CIOIN	F6VBZ6_CIOIN	ENSCINP00000018150	ENSCINP00000027127	Uncharacterized protein.	Telo_bind domain-containing protein.	0.572
F6Q9T0_CIOIN	LOC100179894	ENSCINP00000018150	ENSCINP00000004562	Uncharacterized protein.	Werner syndrome ATP-dependent helicase homolog isoform X1.	0.586
F6TL19_CIOIN	F6PHP1_CIOIN	ENSCINP00000021491	ENSCINP00000006291	ENDO3c domain-containing protein.	ENDO3c domain-containing protein.	0.654
F6TL19_CIOIN	F6UCG0_CIOIN	ENSCINP00000021491	ENSCINP00000012971	ENDO3c domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.568
F6TL19_CIOIN	LOC100179894	ENSCINP00000021491	ENSCINP00000004562	ENDO3c domain-containing protein.	Werner syndrome ATP-dependent helicase homolog isoform X1.	0.675
F6TL19_CIOIN	LOC100183893	ENSCINP00000021491	ENSCINP00000036521	ENDO3c domain-containing protein.	Uncharacterized protein.	0.675
F6UCG0_CIOIN	F6PHP1_CIOIN	ENSCINP00000012971	ENSCINP00000006291	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	ENDO3c domain-containing protein.	0.593
F6UCG0_CIOIN	F6Q9T0_CIOIN	ENSCINP00000012971	ENSCINP00000018150	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	Uncharacterized protein.	0.780
F6UCG0_CIOIN	F6TL19_CIOIN	ENSCINP00000012971	ENSCINP00000021491	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	ENDO3c domain-containing protein.	0.568
F6UCG0_CIOIN	LOC100179894	ENSCINP00000012971	ENSCINP00000004562	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	Werner syndrome ATP-dependent helicase homolog isoform X1.	0.780
F6UCG0_CIOIN	LOC100183893	ENSCINP00000012971	ENSCINP00000036521	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	Uncharacterized protein.	0.430
F6VBZ6_CIOIN	F6Q9T0_CIOIN	ENSCINP00000027127	ENSCINP00000018150	Telo_bind domain-containing protein.	Uncharacterized protein.	0.572
F6VBZ6_CIOIN	LOC100179894	ENSCINP00000027127	ENSCINP00000004562	Telo_bind domain-containing protein.	Werner syndrome ATP-dependent helicase homolog isoform X1.	0.950
LOC100179894	F6PHP1_CIOIN	ENSCINP00000004562	ENSCINP00000006291	Werner syndrome ATP-dependent helicase homolog isoform X1.	ENDO3c domain-containing protein.	0.654
LOC100179894	F6Q9T0_CIOIN	ENSCINP00000004562	ENSCINP00000018150	Werner syndrome ATP-dependent helicase homolog isoform X1.	Uncharacterized protein.	0.586